Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq20156 114 2e-20 seq2620 98.7 1e-15 >seq20156 Length=513389 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||||||||| || ||||| || | | ||||| | || | |||||||| | ||| Sbjct 226788 TTCAAACTCTTCGCCCCAGACGTCACTGAGGCCAGGGCTCTCGTGGGGACACATGAGCGA 226729 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| ||||||| | || ||||| ||||| || ||||||||||||||||| || || Sbjct 226728 CCAATCTCCGTTCTGCTCAACTCGCTTCATGAACAGATCAGGAATCCAAAGGGCGTAGAA 226669 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 ||||| || | ||| |||||||| || || || ||||| | ||||||||| | | Sbjct 226668 CAGATCCCTCGCTCTCTGTTCCTCCTTGCCGGTGTTCTTGCGACAATCGAGGAAATCAAA 226609 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCG 54177 || || | ||||| || |||| ||| |||| | ||||||| || Sbjct 226608 AACGTCTGCGTGCCATGGCTCCAGGTAGATGGCAAACGCTCCAGGGCG 226561 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238 ||||||||||| ||||| | || | ||| ||||| || || |||| ||||||||| | Sbjct 226506 TTGTTTCCTCCTTGATCAACATAGCGAGCAGTGTTGTTGTAGACTCGCAACATTGGCAGC 226447 Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTAC 54296 | ||| || || | || ||||||||||| || | || ||| |||| ||||| | | Sbjct 226446 AAACCGTTTGAAGTGCCGTTGGTCCCGGAAATGAAACTACCAGTGGCGCGAATGCAATGG 226387 Query 54297 TAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 54356 ||| || || || ||||| || | || || || | || || | || || || | Sbjct 226386 ACGTTG--AGCCCGATGCCCCCAGCACTCTTGGAAATGAGCGCACACTGCTTCAAGGTGT 226329 Query 54357 CATAGATGCCCTCTATACTATC 54378 | ||||| ||||| || ||||| Sbjct 226328 CGTAGATACCCTCAATGCTATC 226307 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 53078 ATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGA 53137 || || | |||||| || ||||| ||||| | | | || || | | | | || | Sbjct 227964 ATCATGCGATTCTTCATGTCATCGTTCCACAGTCCATTTTCAGTCAGATCCTTCAGTAAG 227905 Query 53138 TGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 53197 || | || || || || ||||||||||| | |||| |||||||| || || || || Sbjct 227904 TGGTGGTTGACGACCTGGAATTCTCCAGAGAGAACTCGTCGAGTGTAGATGTTGCTAGTG 227845 Query 53198 TACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 53257 || ||||| |||||||| ||||| | ||| ||||| ||||| || || ||||| || Sbjct 227844 TATGGTTCAGTTGACTCATTGTTTCCGAGAATCTGAGCGGTTGAGGCGGTTGGCATTGGA 227785 Query 53258 GCCA 53261 |||| Sbjct 227784 GCCA 227781 >seq2620 Length=811290 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 ||||||||| || ||||| || ||||| || ||||| |||| ||||| || || | Sbjct 744367 ATTTTCATTAACAATTCCATCGCTGGCAGCGAAAAAAGCCAGAACATGAGAAATGAAGTG 744426 Query 24581 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 24640 ||||||||| | || | | ||| | | | ||||| || | || || || || Sbjct 744427 ACGCTCGTCTGGTTTCAGCTGCTCCCAGTGAGAAACGTCTTTTGAGAGGTCGACCTCCTC 744486 Query 24641 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 24700 | ||||| || || || || || ||||| ||||| | |||||||||||| ||||| || Sbjct 744487 TGCCGTCCAGAAAGACGCTTCAGCTTTTTTGTACATTTGCCAGATGTCATGGTATTGTAT 744546 Query 24701 TGGAAAAATAACAAATC 24717 ||| ||||| || |||| Sbjct 744547 TGGGAAAATGACGAATC 744563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593567210119440