Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq18747 89.7 4e-13 seq9036 84.2 2e-11 >seq18747 Length=106157 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||| || ||| | |||||||| ||||| ||||||||| Sbjct 23068 GACAAGGAAGGCATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGCAAGCAACTGGAA 23127 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | || || ||| ||||| || |||||||| || || |||||| ||||| | Sbjct 23128 GATGGCCGCACCCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTGCTG 23187 Query 29175 CGATTACGAGGAGG 29188 || || ||||||| Sbjct 23188 CGCTTGAGAGGAGG 23201 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || | || ||||| ||||||||| || || ||| || Sbjct 22747 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCTCA 22806 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || || || || ||||| | ||| |||||| Sbjct 22807 GACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 22866 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| ||||| |||||||||||| || || ||| ||||| Sbjct 22867 CAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAAC 22926 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| || || || |||||| ||||| | || || ||||||| Sbjct 22927 ATCCAGAAAGAGTCCACCCTTCACTTGGTGCTGCGCTTGAGAGGAGG 22973 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || | || ||||| ||||||||| || || ||| || Sbjct 23203 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCTCA 23262 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || || ||||| | ||| |||||| Sbjct 23263 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 23322 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| ||||| |||||||||||| || || ||| ||||| Sbjct 23323 CAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAAC 23382 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| || || |||||| ||||| | || | ||||||| Sbjct 23383 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTGCGTCTGAGAGGAGG 23429 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | || || | || ||||| || || ||| || ||| ||| | Sbjct 22290 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTGGAGCCCTC 22349 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| || || || || ||||| | ||| |||||| Sbjct 22350 AGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 22409 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || ||| | |||||||| ||||| |||||||||||| || || ||| ||||| Sbjct 22410 GCAGAGATTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAA 22469 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| || || |||||| ||||| | || | ||||||| Sbjct 22470 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTGCGTCTGAGAGGAGG 22517 >seq9036 Length=11236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||| || ||| | |||||||| ||||| ||||||||| Sbjct 10660 GACAAGGAAGGCATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGCAAGCAACTGGAA 10601 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || || ||| ||||| || |||||||| || || |||||| ||||| | Sbjct 10600 GATGGTCGCACCCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTGCTG 10541 Query 29175 CGATTACGAGGAGG 29188 || || ||||||| Sbjct 10540 CGTTTGAGAGGAGG 10527 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||| || ||| | |||||||| ||||| ||||||||| Sbjct 10888 GACAAGGAAGGCATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGCAAGCAACTGGAA 10829 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || || ||| ||||| || |||||||| || || |||||| ||||| | Sbjct 10828 GATGGTCGCACCCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTGCTG 10769 Query 29175 CGATTACGAGGAGG 29188 || || ||||||| Sbjct 10768 CGCTTGAGAGGAGG 10755 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||| || ||| | |||||||| ||||| ||||||||| Sbjct 11116 GACAAGGAAGGCATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGCAAGCAACTGGAA 11057 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || || ||| ||||| || |||||||| || || |||||| ||||| | Sbjct 11056 GATGGTCGCACCCTGAGCGACTACAACATCCAGAAGGAGTCCACCCTTCACTTGGTGCTG 10997 Query 29175 CGATTACGAGGAGG 29188 || || ||||||| Sbjct 10996 CGCTTGAGAGGAGG 10983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428227401162965