Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq13439 127 2e-24 seq3888 120 3e-22 seq19936 84.2 2e-11 >seq13439 Length=213493 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || ||||| || ||||||||||| || |||| ||||| ||| Sbjct 37601 CAGCACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCACTCAGGGTGCGACCATC 37542 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || ||||| |||| | | ||||||||| || || |||||||||||||| Sbjct 37541 CTCAAGCTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCCTCCTTGTC 37482 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | || || || || | ||||| || || | ||| ||||| | ||| | || Sbjct 37481 TTGGATCTTGGCCTTGACATTTTCGATCGTATCAGATGGCTCCACCTCAAGGGTGATGGT 37422 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || ||||| |||||||| Sbjct 37421 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 37389 >seq3888 Length=367485 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||| | || ||||| || || |||||||| ||||||| ||||| ||| Sbjct 211475 CAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATC 211416 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || || |||||||| |||| | | ||||||||| || || ||||| |||||||| Sbjct 211415 TTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCCTTGTC 211356 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| | | ||| ||||| | ||| | || Sbjct 211355 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCACCTCAAGGGTGATGGT 211296 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || ||||| ||||||||| Sbjct 211295 CTTGCCAGTTAGGGTCTTCACAAAGATCTGCATG 211262 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||| | || ||||| || || |||||||| ||||||| ||||| ||| Sbjct 211703 CAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATC 211644 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || || |||||||| |||| | | ||||||||| || || ||||| |||||||| Sbjct 211643 TTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCCTTGTC 211584 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| | | ||| ||||| | ||| | || Sbjct 211583 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCACCTCAAGGGTGATGGT 211524 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || ||||| ||||||||| Sbjct 211523 CTTGCCAGTTAGGGTCTTCACAAAGATCTGCATG 211490 Score = 120 bits (132), Expect = 3e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||||||| | || ||||| || || |||||||| ||||||| ||||| ||| Sbjct 211931 CAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATC 211872 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || || |||||||| |||| | | ||||||||| || || ||||| |||||||| Sbjct 211871 TTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCCTTGTC 211812 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| | | ||| ||||| | ||| | || Sbjct 211811 CTGGATCTTGGCCTTCACATTCTCTATGGTGTCTGAGGGCTCCACCTCAAGGGTGATGGT 211752 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || ||||| ||||||||| Sbjct 211751 CTTGCCAGTTAGGGTCTTCACAAAGATCTGCATG 211718 >seq19936 Length=449466 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| |||| || ||||| || || |||||||| ||||||| ||||| ||| Sbjct 233826 CAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 233885 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||| ||||| || ||||| |||| | | ||||||||||||||| || || Sbjct 233886 CTCAAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGGATTCC 233936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433720408131676