Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq18747 87.8 2e-12 seq3888 84.2 2e-11 seq9036 82.4 6e-11 >seq18747 Length=106157 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | || ||||| || || ||| | || || || | Sbjct 22746 CATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCTC 22805 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | || | ||| || | || || | || |||||| | || || || Sbjct 22806 AGACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 22865 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 |||| | || || | ||| ||||| |||||||||||| || ||| ||| |||| Sbjct 22866 GCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAA 22925 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||||||| |||| ||||| || ||| | || ||| | ||||| Sbjct 22926 CATCCAGAAAGAGTCCACCCTTCACTTGGTGCTGCGCTTGAGAGGAGG 22973 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | || ||||| || || ||| | || || || | Sbjct 23886 CATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCTC 23945 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | || | ||| || | || || | || |||||| | || || || Sbjct 23946 CGACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 24005 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || || | ||| ||||| |||||||||||| | || ||| || |||| Sbjct 24006 GCAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGCCGCACCCTGAGTGACTACAA 24065 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||||||| |||| ||||| || ||| | || ||| | ||||| Sbjct 24066 CATCCAGAAAGAGTCCACCCTTCACTTGGTGCTGCGCTTGAGAGGAGG 24113 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | || ||||| || || ||| | || || || | Sbjct 22518 CATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCTC 22577 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | || | ||| || | || || | || |||||| | || || || Sbjct 22578 AGACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCA 22637 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || || | ||| ||||| |||||||||||| | || ||| || |||| Sbjct 22638 GCAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGCCGCACCCTGAGTGACTACAA 22697 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||||||| |||| ||||| || ||| | || ||| | ||||| Sbjct 22698 CATCCAGAAAGAGTCCACCCTTCACTTGGTGCTGCGCTTGAGAGGAGG 22745 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | || ||||| || || ||| | || || || | Sbjct 22974 CATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCTC 23033 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | || | ||| || | || || | || |||||| | || || || Sbjct 23034 GGACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 23093 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || || | ||| ||||| |||||||||||| | || ||| ||| |||| Sbjct 23094 GCAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGCCGCACCCTGAGCGACTACAA 23153 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||| ||| |||| ||||| || ||| | || ||| | ||||| Sbjct 23154 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTGCGCTTGAGAGGAGG 23201 >seq3888 Length=367485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 24828 CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATC 24887 |||||||||||| ||||| || ||| |||| ||||| || || ||| | || || || | Sbjct 211259 CATCATGCAGATCTTTGTGAAGACCCTAACTGGCAAGACCATCACCCTTGAGGTGGAGCC 211318 Query 24888 GAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 |||| | || | ||| |||| || || | || |||||| | || || Sbjct 211319 CTCAGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGA 211378 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 ||||| | || || | ||| || || |||||||||||| || ||| ||| || Sbjct 211379 TCAGCAGAGATTGATCTTTGCTGGAAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTA 211438 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 || ||| ||||| ||| |||| ||||| || ||||| || Sbjct 211439 CAACATCCAGAAGGAGTCCACCCTTCACTTGGTGTTGCG 211477 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| |||| ||||| || || ||| | || || || | Sbjct 211718 CATGCAGATCTTTGTGAAGACCCTAACTGGCAAGACCATCACCCTTGAGGTGGAGCCCTC 211777 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| |||| | ||| |||| || || | || |||||| | || || || Sbjct 211778 AGACACCATAGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCA 211837 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || || | ||| || || |||||||||||| || ||| ||| |||| Sbjct 211838 GCAGAGATTGATCTTTGCTGGAAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAA 211897 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 ||| ||||| ||| |||| ||||| || ||||| || Sbjct 211898 CATCCAGAAGGAGTCCACCCTTCACTTGGTGTTGCG 211933 >seq9036 Length=11236 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | || ||||| || || ||| | || || || | Sbjct 10754 CATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCTC 10695 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | || | ||| || | || || | || |||||| | || || || Sbjct 10694 CGACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 10635 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || || | ||| ||||| |||||||||||| || ||| ||| |||| Sbjct 10634 GCAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAA 10575 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||| ||| |||| ||||| || ||| | || ||| | ||||| Sbjct 10574 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTGCGTTTGAGAGGAGG 10527 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | || ||||| || || ||| | || || || | Sbjct 10982 CATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCTC 10923 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | || | ||| || | || || | || |||||| | || || || Sbjct 10922 CGACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 10863 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || || | ||| ||||| |||||||||||| || ||| ||| |||| Sbjct 10862 GCAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAA 10803 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||| ||| |||| ||||| || ||| | || ||| | ||||| Sbjct 10802 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTGCGCTTGAGAGGAGG 10755 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| ||||| || ||| | || ||||| || || ||| | || || || | Sbjct 11210 CATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCTC 11151 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | || | ||| || | || || | || |||||| | || || || Sbjct 11150 CGACACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 11091 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || || | ||| ||||| |||||||||||| || ||| ||| |||| Sbjct 11090 GCAGAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAA 11031 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| ||||| ||| |||| ||||| || ||| | || ||| | ||||| Sbjct 11030 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTGCGCTTGAGAGGAGG 10983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418197944641760