Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq20156 113 6e-20 seq2620 107 2e-18 >seq20156 Length=513389 Score = 113 bits (124), Expect = 6e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 |||||||| | |||||| ||||||| | || ||||| ||||| || |||||||||||| Sbjct 226742 GGACACATGAGCGACCAATCTCCGTTCTGCTCAACTCGCTTCATGAACAGATCAGGAATC 226683 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 ||||| || || ||||| || | ||| |||||||| || || || ||||| | | Sbjct 226682 CAAAGGGCGTAGAACAGATCCCTCGCTCTCTGTTCCTCCTTGCCGGTGTTCTTGCGACAA 226623 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 |||||||| | | || || | ||||| || |||| ||| ||||| | ||||||| Sbjct 226622 TCGAGGAAATCAAAAACGTCTGCGTGCCATGGCTCCAGGTAGATGGCAAACGCTCCAGGG 226563 Query 63414 CG 63415 || Sbjct 226562 CG 226561 Score = 93.3 bits (102), Expect = 5e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 62316 ATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGA 62375 || || | |||||| || ||||| ||||| | | | || || | | | | || | Sbjct 227964 ATCATGCGATTCTTCATGTCATCGTTCCACAGTCCATTTTCAGTCAGATCCTTCAGTAAG 227905 Query 62376 TGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 62435 || |||| || || |||||||||||||| | |||| |||||||| || || || || Sbjct 227904 TGGTGGTTGACGACCTGGAATTCTCCAGAGAGAACTCGTCGAGTGTAGATGTTGCTAGTG 227845 Query 62436 TACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 62495 || ||||| |||||||| ||||| | ||| ||||| ||||| || || ||||| || Sbjct 227844 TATGGTTCAGTTGACTCATTGTTTCCGAGAATCTGAGCGGTTGAGGCGGTTGGCATTGGA 227785 Query 62496 GCCA 62499 |||| Sbjct 227784 GCCA 227781 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 ||||||||||| ||||| | || | ||| ||||| || || |||| ||||||||| | Sbjct 226506 TTGTTTCCTCCTTGATCAACATAGCGAGCAGTGTTGTTGTAGACTCGCAACATTGGCAGC 226447 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTAC 63534 | ||||||||| | || ||||| ||||| || | | ||| |||| ||||| | | Sbjct 226446 AAACCGTTTGAAGTGCCGTTGGTCCCGGAAATGAAACTACCAGTGGCGCGAATGCAATGG 226387 Query 63535 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63594 ||| || || || ||||| || | || || || | || || | || || |||| Sbjct 226386 ACGTTG--AGCCCGATGCCCCCAGCACTCTTGGAAATGAGCGCACACTGCTTCAAGGTGT 226329 Query 63595 CATAGATGCCTTCTATGCTATC 63616 | ||||| || || |||||||| Sbjct 226328 CGTAGATACCCTCAATGCTATC 226307 >seq2620 Length=811290 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 ||||||||| || |||||||| ||||| || ||||| |||| ||||| || || | Sbjct 744367 ATTTTCATTAACAATTCCATCGCTGGCAGCGAAAAAAGCCAGAACATGAGAAATGAAGTG 744426 Query 34028 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 34087 ||||||||| | || | | ||| | | | ||||| || | || || || || Sbjct 744427 ACGCTCGTCTGGTTTCAGCTGCTCCCAGTGAGAAACGTCTTTTGAGAGGTCGACCTCCTC 744486 Query 34088 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 34147 | ||||| || || || || || ||||| ||||| | |||||||||||| ||||| || Sbjct 744487 TGCCGTCCAGAAAGACGCTTCAGCTTTTTTGTACATTTGCCAGATGTCATGGTATTGTAT 744546 Query 34148 TGGGAAAATAACAAATC 34164 ||||||||| || |||| Sbjct 744547 TGGGAAAATGACGAATC 744563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629653823805840