Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq14613 150 4e-32 seq1283 132 1e-26 >seq14613 Length=1081 Score = 150 bits (166), Expect = 4e-32 Identities = 223/314 (71%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 3166 ATGCTGCTGCCAGCCGATCTGGATTACAAGGCACTGACTGTGTCGCCAGTTGACGCTCAG 3225 || ||||| || || ||||||||||||||||| |||| | ||||| || || ||| Sbjct 733 ATCCTGCTACCGGCAGATCTGGATTACAAGGCGATGACCATCCCGCCAAACGAAGCCCAG 792 Query 3226 ATCATTGACATGATGAAGCTGAACCGTTCAATGATCGCCGGTATTTTCAATATTCCTGCG 3285 |||| ||| || ||| ||| || | ||||| |||||||||||||| | Sbjct 793 TTCATCGACTCTCGAAAAATGACCCGCTCCGAAGTGGCCGGCATTTTCAATATTCCCTCT 852 Query 3286 CACATGATTAATGACCTCGAAAAAGCCACCTTCTCCAATATTTCTGCG--CAGGCGATTC 3343 |||||||| || || || || |||||||| ||| ||||| || ||| ||||| || | Sbjct 853 CACATGATCAACGATCTGGACAAAGCCACGTTCAGCAATA--TCAGCGAACAGGCTATCC 910 Query 3344 AGTTTGTCCGCTACACGATGATGCCGTGGGTGACGAACTGGGAGCAGGAGCTTAACCGTC 3403 |||| || || | || |||||||| |||||| ||| |||||||||||||| ||||| Sbjct 911 AGTTCGTGCGACATACCATGATGCCCTGGGTGGTGAAGTGGGAGCAGGAGCTCAACCGAA 970 Query 3404 GCTTGTTTACCCGCGCTGAGTTAGCCGCCGGGTATTACGTCAGGTTCAATCTGACGGGGC 3463 | || ||| || || | || || |||||| || ||||||||||| | || Sbjct 971 AACTATTCACCACTGCCGAACGAAAAGCGGGTTATTACATCCGGTTCAATCTGTCCGGCT 1030 Query 3464 TTTTACGCGGAACT 3477 | ||||||| ||| Sbjct 1031 TGCTACGCGGTACT 1044 >seq1283 Length=34873 Score = 132 bits (146), Expect = 1e-26 Identities = 289/430 (67%), Gaps = 2/430 (0%) Strand=Plus/Plus Query 3784 ATTCCGCGAAATCATCCGGCCCGGCGCTTTTGACGATGTGCTTGGTGATGATGTACGCGC 3843 |||| | ||||||||| |||||| || ||||| ||||| || | ||| |||||| | || Sbjct 3408 ATTCAGGGAAATCATCATGCCCGGTGCCTTTGATGATGTACTGGATGACGATGTAAGAGC 3467 Query 3844 ACTGTTTAACCACGATCCTAATTTTATTCTTGGGCGTAGTGCAGCAGGCACGCTGA-ATC 3902 ||||| ||||| || || || ||| |||| || | | || | || |||| || Sbjct 3468 CCTGTTCAACCATGACCCCAACTTTGTTCTGGGCAGAAACAAGGCGGAAACCCTGACATT 3527 Query 3903 TCTCAGTTGATGAGCGCGGATTACGCTATGACATCCAGGCTCCGGAGACACAGACCATTC 3962 || ||||| ||| | || ||||| ||| | || ||| | || |||||||| | Sbjct 3528 AAGCACC-GATGAAACCGGCCTCCGGTATGAAATCGAAGCCCCGCAAACCCAGACCATCC 3586 Query 3963 GTGATCTGGTGCTGGCCCCGATGCAACGTGGAGATATTAACCAGTCATCTTTCGCTTTCC 4022 ||||||||||||||| || ||| | ||||| ||||| |||||| || || ||||| | Sbjct 3587 GTGATCTGGTGCTGGAACCCATGAAGCGTGGGGATATAAACCAGAGTTCCTTTGCTTTTC 3646 Query 4023 GTGTCGCCCGTGACGGTGAGGAGTGGTATCAGGATGAGGACGGGGTTGTTATTCGCGAGA 4082 | || | | | ||||| || ||| | || || || ||||| || | ||| | Sbjct 3647 GGGTTGGCATCCATGGTGATGAATGGGCAGAAGACGATGATGGGGTCATTGTCCGCACCA 3706 Query 4083 TAACCCGCTTTTCCCGTCTGCTGGATGTCAGTCCTGTGACATATCCTGCCTATCAGGAGG 4142 | | || ||| ||| | ||| || |||| ||||| ||| | || || || | Sbjct 3707 TCCACAAATTCAGCCGCCTGTTTGATATCGGTCCGGTGACTTATGCCGCTTACACCGATG 3766 Query 4143 CTGACTCGGCTGTTCGCTCCATGAAAGCATGGCAGGAGGCGCGCAACAGCGGCGCGCTAC 4202 | || || ||||| |||||| ||||||||| |||| ||||| || || Sbjct 3767 CCAGTTCAGCCACCCGCTCAATGAAACAATGGCAGGAAGCGCAAGACAGCAGCCTCCTGA 3826 Query 4203 AGAAAGCCAT 4212 | |||||||| Sbjct 3827 AAAAAGCCAT 3836 Score = 118 bits (130), Expect = 3e-22 Identities = 260/386 (67%), Gaps = 23/386 (6%) Strand=Plus/Plus Query 574 TACCCCAACGTAAATGCTGCCAATCAGTATGCCCGTGATGTCGTGCGCGGAAAGATTGTG 633 |||||||| || ||| | ||||||| ||||| || ||||| || |||| || || | Sbjct 498 TACCCCAATGTTAATTCGGCCAATCGTTATGCGCGGGATGTAGTCAGCGGCAAAATCATT 557 Query 634 GCCTGCCAGTTTGTGATTCAGGCCTGCCAGCGCCATCTTGATGACCTG----ATGGCGGA 689 ||||||| | ||| | ||| || || || || || ||||| ||| || | | Sbjct 558 GCCTGCCGTTATGTTCGCCTGGCTTGTCAACGTCACCTGGATGATCTGGGAAATTCCAAA 617 Query 690 AAAAAGTAAGTCGTTTCGTTACCGCTTCGACAAGGACCTGGCTGAACGGGTCGCGAAATT 749 |||||| | | | ||||| ||||| | ||| |||||||| | | ||||| Sbjct 618 AAAAAGGATTAC----CCCTACCGATTCGATAGAGACAAAGCTGAACGAGCCTGTAAATT 673 Query 750 TATTCAGCTGTTGCCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCC-------- 801 ||||||||| | || || ||||| || ||||||||| ||| | ||| Sbjct 674 TATTCAGCTTCTCCCCCATACCAAAGGAGAGTGGGCAAGAAAGCGCGGGCCTGAAGGGCT 733 Query 802 -ATCACGCTGGAACCGTGGCAGCTCTTTGTGATCT--GCTGTGCGTTTGGCTGGGTCAAT 858 || ||||||||| ||||| | ||| | |||| || ||| ||||||||||| | Sbjct 734 AATAACGCTGGAAAGCTGGCAACGGTTTATTATCTCGGCGGTG--TTTGGCTGGGTTTTT 791 Query 859 AAAGGCTCCCGGC-TGCGCCGCTTCAGGGAGGTGTATACCGAAATCCCCCGTAAGAACGG 917 ||| | | ||| | || || ||||| || || |||| |||||| | || || || || Sbjct 792 AAA-TCAACGGGCTTACGTCGTTTCAGTGAAGTTTATAACGAAATTTCACGGAAAAATGG 850 Query 918 CAAATCGGCAATCTCTGCCGGTGTTG 943 ||||| ||||| |||| ||||||| Sbjct 851 TAAATCCGCAATAACTGCGGGTGTTG 876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118485922523496