Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq20156 109 8e-19 seq2620 98.7 1e-15 >seq20156 Length=513389 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| ||||| || ||||| || || | ||||| | |||| |||||||| | ||| Sbjct 226788 TTCAAACTCTTCGCCCCAGACGTCACTGAGGCCAGGGCTCTCGTGGGGACACATGAGCGA 226729 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 ||| ||||| | | || ||||| ||||| || ||||||||||||||||| || || Sbjct 226728 CCAATCTCCGTTCTGCTCAACTCGCTTCATGAACAGATCAGGAATCCAAAGGGCGTAGAA 226669 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||| || | ||| || ||||| || || || ||||| | ||||||||| | | Sbjct 226668 CAGATCCCTCGCTCTCTGTTCCTCCTTGCCGGTGTTCTTGCGACAATCGAGGAAATCAAA 226609 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 || || | ||||| || |||| ||| ||||| Sbjct 226608 AACGTCTGCGTGCCATGGCTCCAGGTAGATGGC 226576 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 80089 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 80148 ||||||||||| ||||| | || | ||| ||||| || || |||| ||||||||| | Sbjct 226506 TTGTTTCCTCCTTGATCAACATAGCGAGCAGTGTTGTTGTAGACTCGCAACATTGGCAGC 226447 Query 80149 ATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTAC 80206 | ||| || || || || ||||||||||| || | || ||| |||| ||||| | | Sbjct 226446 AAACCGTTTGAAGTGCCGTTGGTCCCGGAAATGAAACTACCAGTGGCGCGAATGCAATGG 226387 Query 80207 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 80266 ||| || || || ||||| || | || || || | || || | || || || | Sbjct 226386 ACGTTG--AGCCCGATGCCCCCAGCACTCTTGGAAATGAGCGCACACTGCTTCAAGGTGT 226329 Query 80267 CATAGATGCCCTCTATGCTATC 80288 | ||||| ||||| |||||||| Sbjct 226328 CGTAGATACCCTCAATGCTATC 226307 Score = 87.8 bits (96), Expect = 3e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 79054 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGT 79113 || || || || ||||||||||| | |||| |||||||| || || || || |||||| Sbjct 227898 TTGACGACCTGGAATTCTCCAGAGAGAACTCGTCGAGTGTAGATGTTGCTAGTGTATGGT 227839 Query 79114 TCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171 || || ||||| ||||| | ||| ||||| ||||| || |||||||| || |||| Sbjct 227838 TCAGTTGACTCATTGTTTCCGAGAATCTGAGCGGTTGAGGCGGTTGGCATTGGAGCCA 227781 >seq2620 Length=811290 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 ||||||||| || ||||| || ||||| || ||||| |||| ||||| || || || Sbjct 744367 ATTTTCATTAACAATTCCATCGCTGGCAGCGAAAAAAGCCAGAACATGAGAAATGAAGTG 744426 Query 50406 TTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 50465 |||| ||| | || | | ||| | | | ||||| || | || || || || Sbjct 744427 ACGCTCGTCTGGTTTCAGCTGCTCCCAGTGAGAAACGTCTTTTGAGAGGTCGACCTCCTC 744486 Query 50466 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 50525 | ||||| || || || || || ||||| ||||| | |||||||||||| ||||| || Sbjct 744487 TGCCGTCCAGAAAGACGCTTCAGCTTTTTTGTACATTTGCCAGATGTCATGGTATTGTAT 744546 Query 50526 TGGGAAAATAACAAATC 50542 ||||||||| || |||| Sbjct 744547 TGGGAAAATGACGAATC 744563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718082023176920