Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq20156 98.7 1e-15 seq2620 98.7 1e-15 >seq20156 Length=513389 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 71137 TTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGT 71196 || || || || ||||||||||| | |||| |||||||| || || || || || ||| Sbjct 227898 TTGACGACCTGGAATTCTCCAGAGAGAACTCGTCGAGTGTAGATGTTGCTAGTGTATGGT 227839 Query 71197 TCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 71256 || ||||||||| ||||| | ||| ||||| ||||| || || ||||| || |||| Sbjct 227838 TCAGTTGACTCATTGTTTCCGAGAATCTGAGCGGTTGAGGCGGTTGGCATTGGAGCCATG 227779 Query 71257 AATAGACTATTTCTAAGACCATGT 71280 | ||||| || || | ||||||| Sbjct 227778 AGGAGACTGTTCCTCACACCATGT 227755 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 ||||||||||| ||||| | || | ||| ||||| || || |||| ||||||||| | Sbjct 226506 TTGTTTCCTCCTTGATCAACATAGCGAGCAGTGTTGTTGTAGACTCGCAACATTGGCAGC 226447 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289 | ||| || || | || ||||||||||| || | || ||| |||| ||||| | || Sbjct 226446 AAACCGTTTGAAGTGCCGTTGGTCCCGGAAATGAAACTACCAGTGGCGCGAATGCAATGG 226387 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 ||| || || || ||||| || | || || || | || || | || || || | Sbjct 226386 ACGTTG--AGCCCGATGCCCCCAGCACTCTTGGAAATGAGCGCACACTGCTTCAAGGTGT 226329 Query 72350 CATAGATGCCCTCTATACTATC 72371 | ||||| ||||| || ||||| Sbjct 226328 CGTAGATACCCTCAATGCTATC 226307 Score = 89.7 bits (98), Expect = 7e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048 |||||||| | ||||| ||||| | | | ||||| ||||| || |||||||||||| Sbjct 226742 GGACACATGAGCGACCAATCTCCGTTCTGCTCAACTCGCTTCATGAACAGATCAGGAATC 226683 Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108 ||||| || || ||||| || | ||| || ||||| || || || ||||| | | Sbjct 226682 CAAAGGGCGTAGAACAGATCCCTCGCTCTCTGTTCCTCCTTGCCGGTGTTCTTGCGACAA 226623 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 |||||||| | | || || | ||||| || |||| ||| ||||| Sbjct 226622 TCGAGGAAATCAAAAACGTCTGCGTGCCATGGCTCCAGGTAGATGGC 226576 >seq2620 Length=811290 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510 |||||| || || ||||| || ||||| || ||||| |||| ||||| || || | Sbjct 744367 ATTTTCATTAACAATTCCATCGCTGGCAGCGAAAAAAGCCAGAACATGAGAAATGAAGTG 744426 Query 42511 TTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 42570 ||||| ||| | | | | ||| | | | ||||| || | || || || || Sbjct 744427 ACGCTCGTCTGGTTTCAGCTGCTCCCAGTGAGAAACGTCTTTTGAGAGGTCGACCTCCTC 744486 Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAAT 42630 | ||||||| || || ||||| || ||||| ||||| | |||||| ||||| ||||| || Sbjct 744487 TGCCGTCCAGAAAGACGCTTCAGCTTTTTTGTACATTTGCCAGATGTCATGGTATTGTAT 744546 Query 42631 TGGGAAAATAACAAATC 42647 ||||||||| || |||| Sbjct 744547 TGGGAAAATGACGAATC 744563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670964678640280