Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq18747 100 3e-16 seq20156 98.7 1e-15 >seq18747 Length=106157 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | ||||| || || |||| || || || || || |||||||| ||||| Sbjct 22518 GCCTCCTCTCAGACGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 22459 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||| ||||| || || ||| |||||| | |||||||| || || Sbjct 22458 CAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGATCTGGGGG 22399 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | ||||| | ||| || || Sbjct 22398 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCAC 22339 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||||||||| | || || ||||| || ||||| Sbjct 22338 CTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 22291 >seq20156 Length=513389 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 157085 TCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCG 157144 || ||||| || | |||| || || || | |||| |||||||||||| ||| || Sbjct 227091 TCATCGGGGGCAGAGTATTCGACAATCTCGGTGCACAGATTGCTGCATTTGATCGTACCT 227032 Query 157145 CAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCG 157204 | || |||||||||||| |||||||||| ||| ||||||||||||||||| || || Sbjct 227031 AAGTTCTGTTGATTGCTTTTTCGGTTGCAAGAGTCTTTGTATAACATGTACGGAGTTCCT 226972 Query 157205 GTTTCGGCTTGAATTTCTATGATG 157228 ||||| | ||| || |||||| Sbjct 226971 GTTTCAGTCTGAGACTCAATGATG 226948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506882557242960