Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq18747 102 6e-17 seq9036 98.7 7e-16 seq3888 93.3 3e-14 >seq18747 Length=106157 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||||||| | | || || ||||||||||| ||||| || |||||||| |||| Sbjct 22975 TGCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGC 22916 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||| | ||| |||||||| | ||||| | ||| || || | Sbjct 22915 TCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGGG 22856 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| || ||| || ||| | || ||||| || || | Sbjct 22855 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCTGAGGGCTCAA 22796 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||||||||| || || || || || || ||||| || ||||| Sbjct 22795 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 22747 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||||||| | | || || ||||||||||| ||||| || |||||||| || | Sbjct 24115 TGCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAC 24056 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||| | ||| |||||||| | ||||| | || || || | Sbjct 24055 TCAGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 23996 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| || ||| || ||| | || ||||| ||| || | Sbjct 23995 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCGGAGGGCTCAA 23936 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||||||||| || || || || || || ||||| || ||||| Sbjct 23935 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 23887 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||||||| | | || || ||||||||||| || || || |||||||| |||| Sbjct 23203 TGCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 23144 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||| | ||| |||||||| | ||||| | || || || | Sbjct 23143 TCAGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 23084 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| || ||| || ||| | || ||||| || || | Sbjct 23083 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCCGAGGGCTCAA 23024 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||||||||| || || || || || || ||||| || ||||| Sbjct 23023 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 22975 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| ||||||| | | || || ||||||||||| || || || |||||||| |||| Sbjct 23431 TGCCTCCTCTCAGACGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 23372 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||| | ||| |||||||| | ||||| | || || || | Sbjct 23371 TCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 23312 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| || ||| ||| ||| | || ||||| || || | Sbjct 23311 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCTGAGGGCTCAA 23252 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||||||||| || || || || || || ||||| || ||||| Sbjct 23251 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 23203 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||||||| | | || || ||||||||||| || || || |||||||| || | Sbjct 23659 TGCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAC 23600 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||| | ||| |||||||| | ||||| | || || || | Sbjct 23599 TCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 23540 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| || ||| || ||| | || ||||| || || | Sbjct 23539 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCTGAGGGCTCAA 23480 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||||||||| || || || || || || ||||| || ||||| Sbjct 23479 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 23431 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||||||| | | || || ||||||||||| || || || |||||||| || | Sbjct 23887 TGCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAC 23828 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||| | ||| |||||||| | ||||| | || || || | Sbjct 23827 TCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 23768 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| || ||| || ||| | || ||||| || || | Sbjct 23767 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCCGAGGGCTCAA 23708 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||||||||| || || || || || || ||||| || ||||| Sbjct 23707 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 23659 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | | || || ||||||||||| || || || |||||||| || || Sbjct 24341 CCGCCTCTCAAACGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCACTC 24282 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||| |||||||| | ||||| | || || || ||| Sbjct 24281 AGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGA 24222 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| || ||| | || ||||| ||| || || Sbjct 24221 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCGGAGGGCTCAACC 24162 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||||||| || || || || || || ||||| || ||||| Sbjct 24161 TCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 24115 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||||||| | | || || ||||||||||| ||||| || |||||||| || | Sbjct 22747 TGCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAC 22688 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||| | ||| |||||||| | ||||| | || || || | Sbjct 22687 TCAGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 22628 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | || ||||| ||||| || || ||| || ||| | || ||||| || || Sbjct 22627 GGATGCCTTCCTTGTCCTGGATCTTAGCT-TTGACATTCTCAATGGTGTCTGAGGGCTCA 22569 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | ||||||||| || || || || || || ||||| || ||||| Sbjct 22568 ACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 22519 >seq9036 Length=11236 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||||||| | | || || ||||||||||| || || || |||||||| |||| Sbjct 10525 TGCCTCCTCTCAAACGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 10584 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||| | ||| |||||||| | ||||| | || || || | Sbjct 10585 TCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 10644 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| || ||| || ||| | || ||||| ||| || | Sbjct 10645 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCGGAGGGCTCAA 10704 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||||||||| || || || || || || ||||| || ||||| Sbjct 10705 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 10753 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||||||| | | || || ||||||||||| || || || |||||||| |||| Sbjct 10753 TGCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 10812 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||| | ||| |||||||| | ||||| | || || || | Sbjct 10813 TCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 10872 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| || ||| || ||| | || ||||| ||| || | Sbjct 10873 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCGGAGGGCTCAA 10932 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||||||||| || || || || || || ||||| || ||||| Sbjct 10933 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 10981 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||||||| | | || || ||||||||||| || || || |||||||| |||| Sbjct 10981 TGCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 11040 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||| | ||| |||||||| | ||||| | || || || | Sbjct 11041 TCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 11100 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| || ||| || ||| | || ||||| ||| || | Sbjct 11101 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCGGAGGGCTCAA 11160 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||||||||| || || || || || || ||||| || ||||| Sbjct 11161 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 11209 >seq3888 Length=367485 Score = 93.3 bits (102), Expect = 3e-14 Identities = 169/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | || || || ||||||||||| || || || |||||||| |||| Sbjct 211491 TGCCACCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 211432 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||| | ||| || ||||| | ||||| | || || || | Sbjct 211431 TCAGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGG 211372 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| ||||| || ||| ||| ||| | || ||||| || || | Sbjct 211371 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCA 211312 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT-AT-TTGAAAA 15372 | || | ||| ||||| || || || || || || ||||| || ||||| || || ||| Sbjct 211311 CCTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCATGATGCTGTAAA 211252 Query 15373 TAAAA 15377 ||||| Sbjct 211251 TAAAA 211247 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | || || || ||||||||||| || || || |||||||| |||| Sbjct 211719 TGCCACCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 211660 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || | | | ||||| | ||| || ||||| | ||||| | || || || | Sbjct 211659 TCAGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGG 211600 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| ||||| || ||| ||| ||| | || ||||| || || | Sbjct 211599 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCA 211540 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| ||||| || || || || || || ||||| || ||||| Sbjct 211539 CCTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 211491 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | || || || ||||||||||| || || || |||||||| ||||| Sbjct 211945 CCCCCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 211886 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||| || ||||| | ||||| | || || || || Sbjct 211885 AGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 211826 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||| ||| | |||||||| || || || Sbjct 211825 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCTATGGTGTCTGAGGGCTCCACC 211766 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || || || || ||||| || ||||| Sbjct 211765 TCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 211719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362087374330623