Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq18747 82.4 5e-11 >seq18747 Length=106157 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | | |||||| || || ||| |||||| || || || || ||| | Sbjct 22973 CCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGCTC 22914 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | || |||| |||| ||| || || ||||| ||||| | |||||| || | || Sbjct 22913 AGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGGGGA 22854 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || || || || ||| || | ||| || |||| ||||| || Sbjct 22853 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCTGAGGGCTCAACC 22794 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||||| || || || || | ||||| ||||| || |||||| Sbjct 22793 TCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 22746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354687650906844