Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3888 132 1e-25 seq2620 95.1 3e-14 >seq3888 Length=367485 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||||||||| || | | || | || | || || || ||||| || || ||||| Sbjct 211946 TCCCCCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 211887 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || | ||| ||||| ||||| ||||||||||| || | ||||| ||||| || || Sbjct 211886 CAGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGG 211827 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||| || ||||| ||||| || || ||||| |||| ||| || || || || Sbjct 211826 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCTATGGTGTCTGAGGGCTCCAC 211767 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 211766 CTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 211719 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || | ||| ||||| ||||| |||||| Sbjct 211459 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGTTGCTTTCCA 211400 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||| || || || ||||| || ||||| ||||| || || Sbjct 211399 GCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 211340 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| || || || ||||| ||||| || || Sbjct 211339 ACATTCTCAATGGTGTCTGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTC 211280 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 211279 TTCACAAAGATCTGCAT 211263 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || | ||| ||||| ||||| |||||| Sbjct 211687 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGTTGCTTTCCA 211628 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||| || || || ||||| || ||||| ||||| || || Sbjct 211627 GCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 211568 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| || || || ||||| ||||| || || Sbjct 211567 ACATTCTCAATGGTGTCTGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTC 211508 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 211507 TTCACAAAGATCTGCAT 211491 >seq2620 Length=811290 Score = 95.1 bits (104), Expect = 3e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||| ||||| || ||||| || || || ||||||||||| || ||||| ||| Sbjct 744000 GTCGCATTTGCTGCTGTGGAGGGTATTTTTTTCTCTGGGTCTTTTGCAGCCATCTTCTGG 743941 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| | ||| | ||||| || | || ||| |||||| ||||| ||||| || Sbjct 743940 TTGAAGAAGCGTGGCGTGATGCCTGGTCTCACGTTCAGTAACGAGTTGATCAGCAGAGAT 743881 Query 269258 GA 269259 || Sbjct 743880 GA 743879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151091508069524