Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq11361 192 4e-44 seq11296 149 4e-31 seq15008 116 2e-21 >seq11361 Length=1230 Score = 192 bits (212), Expect = 4e-44 Identities = 430/637 (68%), Gaps = 23/637 (4%) Strand=Plus/Minus Query 71865 ACGGGATTTACCGATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCATCATT 71924 || || |||| ||||| || | | ||| | || | ||||| |||||| | |||||| Sbjct 635 ACCGGTTTTAAAGATCTGGATGAAATGACCTCGGGTATGCAGCCATCCGATATGATCATT 576 Query 71925 GTCGCCGCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCC 71984 || || ||||| || || ||||| ||||| |||||||| ||||| || || || || | Sbjct 575 GTGGCTGCCCGTCCTTCCATGGGTAAGACGACGTTTGCCATGAACCTGGTTGAGAA---C 519 Query 71985 GCAGTTCGTAAC---GATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAG 72041 || | | |||| || ||| || |||| || || |||||||||||||| | ||| Sbjct 518 GCTCTGCTTAACAGCGAGAAGGGTGTCATGGTCTTCAGTCTTGAGATGCCGAGTGAGCAG 459 Query 72042 CTGATGATGCGCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGG 72101 |||||||||| || | || || | | | ||||| | |||| | || Sbjct 458 TTGATGATGCGTATGCTTTCATCCCTGGGGAGGATCAATCAGTCCAAGGTTCGAAGTGGT 399 Query 72102 CAACTTAACGACGAGGATTGGGCGCGGGTTTCTGGCG-CAATGG---GTATTCTGTTGGA 72157 || || | || ||||| ||| | | | | || || | | | ||||| || Sbjct 398 CAGCTGGAGGAAGAGGACTGGCCTAAGTTGT-TGTCGGCGGTTGAACGTATTAAA---GA 343 Query 72158 CAAGCAGAATATTTTTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCG 72217 |||| || | |||||||||||| | || | | | || | || | || || || Sbjct 342 CAAGAAGC---TGTTTATTGATGACACGGCCGGCATCAGCCCATCGGAAATGCGCTCACG 286 Query 72218 CGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCA 72277 | ||| || || | ||| | |||| | | | ||||||||||||||||||||||| Sbjct 285 GGTTCGCCGGGTGGTCAGAGAGCACGGTGATCTTGGTATGATTATGATCGACTACCTGCA 226 Query 72278 ACTTATGCGCGTCCCCGAGCT---GCAAGATAACCGAACGCTGGAAATTGCCGAGATTTC 72334 || |||| |||| | ||| | || || |||| |||||| |||||||||| Sbjct 225 GCTGATGCAGATCCCAG-GCTTTGGTGAGGGAA--GAACCAATGAAATTTCCGAGATTTC 169 Query 72335 TCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACAACT 72394 || || ||||| || | || ||||| || |||||||||| | ||| |||| || || Sbjct 168 CCGATCGCTGAAAGCTATTGCCAAGGAGTTCGAAGTACCGGTTATTGCACTGTCTCAGCT 109 Query 72395 TAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATC 72454 || || || ||||| ||| | | ||||||| || ||||| || || | |||||||| Sbjct 108 GAACCGTTCTCTTGAGCAGAGACCAAACAAACGTCCTGTAAACTCTGACCTTCGTGAATC 49 Query 72455 AGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTT 72491 ||| || || ||||||||||| ||| | ||||||||| Sbjct 48 AGGCGCCATCGAGCAGGACGCTGACGTCATTATGTTT 12 >seq11296 Length=1234 Score = 149 bits (164), Expect = 4e-31 Identities = 232/332 (70%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 8441 TCCAGCAGGTGGCGGAAATTCATGATGGTGGTGCGGTCCGGCAAGGCGCTATCCAGGGAT 8500 ||||||||||| || || ||||| |||| |||| || || | || ||||||| ||| Sbjct 1232 TCCAGCAGGTGTCGAAAGTTCATAATGGCTGTGCAATCTGGAATCGCTTTATCCAGAGAT 1173 Query 8501 AACCGGGCAAACAGACGCATGGAGGCGATTTCGTACAGAGCATCTTCCATCGCGCCATCG 8560 |||| || ||| | ||||||| | ||||| || |||||||||||||| ||| || Sbjct 1172 AACCCGGTAAATAATCGCATGGGCACAATTTCATAAAGAGCATCTTCCATAGCGGGGTCA 1113 Query 8561 CTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGT 8620 || ||| ||||||| || || | |||||| || || || ||||| | ||| |||||| Sbjct 1112 CTGAGGCTGTACCATTGTTGAAGGCAGTGTATTCGGAGTATGGTGGATAACGGGTAAGGT 1053 Query 8621 CGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCAT 8680 | || | ||| || | ||||||||| || || || | | || | | | ||||| Sbjct 1052 CTGCGCCTATTGCCGGGCTTGGGGTAGTGAGGTTCAATAATTGCCTCAAGGCGGTGCCAG 993 Query 8681 GGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTG 8740 || | | | ||||| |||| | ||| || ||||| | |||||| |||||||| Sbjct 992 GGGATCAGTTTATCCATACGGGCAAGGAATATTTCTTTGCGGGTCTGGCGGCGCTTTTGA 933 Query 8741 CTGAATTCACTGTCGGCGAAGGTAAGTTGATG 8772 |||||||| ||| | ||| | || || || Sbjct 932 GTGAATTCAGCGTCAGAAAAGCTGAGCTGTTG 901 >seq15008 Length=1066 Score = 116 bits (128), Expect = 2e-21 Identities = 182/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 8516 CGCATGGAGGCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAA 8575 |||||||| || ||||| || || ||||||||||| || ||| || ||| ||||||| Sbjct 1066 CGCATGGACGCAATTTCATAAAGGGCATCTTCCATGGCCGGATCACTGAGGCTGTACCAT 1007 Query 8576 TGCTGCATGCAGTGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCA 8635 || || | |||||| || || |||||||| | ||| ||||||| || |||||||| Sbjct 1006 TGTTGAAGGCAGTGTATTCGGAGCATGGTGAATAACGGGTAAGGTCTACGCCCATTACCG 947 Query 8636 GCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCC 8695 | ||||||||| ||||| || | || | | ||||| || | | | ||| Sbjct 946 GGTTTGGGGTAATGAGGCTCAATAATGGCCTCAAGACGATGCCAGGGAATCAGTTCATCC 887 Query 8696 ATGCGGGACAAGAAA-ATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTC 8754 || |||| ||||||| || ||||| | |||||| || ||||| |||||||| ||| Sbjct 886 ATACGGG-CAAGAAATATTTCTTTGCGGGTCTGGCGACGCTTTTGAGTGAATTCAGCGTC 828 Query 8755 GGCGAAGGTAAGTTGATG 8772 | ||| | || || || Sbjct 827 AGAAAAGCTGAGCTGTTG 810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303158318789763