Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq1283 143 1e-29 seq11123 140 1e-28 seq18637 93.3 2e-14 >seq1283 Length=34873 Score = 143 bits (158), Expect = 1e-29 Identities = 213/299 (71%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 11195 TCGACCACTACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTG 11254 || ||||| ||||| ||| |||| ||||||| ||||| | |||||||||| ||||| Sbjct 30969 TCAACCACGACCTCAGTGGTGTATCGGTCCTGACCGTCTTTATCCTGCCACTTTCGGGTC 30910 Query 11255 CGTAGGCTGCCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCG 11314 | || |||||||||| || |||| |||||| || ||||| ||| || || || Sbjct 30909 TGGAGCTTGCCTTCGATATAAACCTTGGAGCCTTTATTGAGGTACTGCTGGGCAATCTCC 30850 Query 11315 GCCAGCCGGCCAAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTC 11374 |||||| || |||| ||| ||||| ||||| ||||| ||||||||||||||||| Sbjct 30849 GCCAGCTTCCCGAAGATCACCACCCGATGCCATTCGGTCTTTTCCTGCTGCTGGCCGGTG 30790 Query 11375 TGCTTGTCTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCCC 11434 | ||| || ||||| || || |||||||| |||| || || || | | | ||| Sbjct 30789 TTCTTATCCTTCCATGCCTCACTGGTGGCCAG--TGAGAGA-TTGGCCACGGCTGCACCC 30733 Query 11435 GG---GGTAGATCTTGCGTCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGTT 11490 | ||| | | | || ||||| | |||||| | ||||| || ||||| ||||| Sbjct 30732 TGACCCGTAAACCGAACATCCGGATCGTCGCCCAGGTTGCCGATTAGAATTACTTTGTT 30674 >seq11123 Length=1243 Score = 140 bits (154), Expect = 1e-28 Identities = 220/314 (70%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 11186 CCGTTGATGTCG---ACCACTACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGC 11242 ||||||| | || ||||| || || ||| |||| |||||||||||| | | ||||| Sbjct 387 CCGTTGAAGCCGGTGACCACGACTTCCGTGGTGTATCGGTCCTGGCCGTGATTGTCCTGC 446 Query 11243 CACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGC 11302 ||||||||||| | || ||||||||||||||| | | |||||| |||| ||| Sbjct 447 CACTTGCGGGTCTGGAGTTTGCCTTCGATGTAGAGTTTGCTGCCCTTGCGCACCAGCTGC 506 Query 11303 GCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGC 11362 || || || |||||| ||| ||| |||| |||||||||||||| | ||||| Sbjct 507 TGGGCAATGTCTGCCAGCTTGCCGAAGGTGACGATGCGGTGCCACTCGGTTCTTTCCTGT 566 Query 11363 TGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACC 11422 |||| ||| || | ||| ||||| | || || || ||||||| | || ||| Sbjct 567 GGCTGTCCGTTCCG---GTCCTTCCATTTCTCCGAGGTAGCAAGACTGATGTTGGCCACC 623 Query 11423 GCCTTTCCGCCCGGGGTAGATCTTGCGTCTGGATCCTGGCCCAGATGGCCGACCAGGATT 11482 || | || || |||||| | | || | || ||||| || | ||| || |||||||| Sbjct 624 GCTTCGCCACCGGGGGTATAGCGCACGACGGGGTCCTGCCCGACATGCCCAACCAGGATG 683 Query 11483 ACCTTGTTCACTCC 11496 || || || || || Sbjct 684 ACTTTATTAACGCC 697 >seq18637 Length=6726 Score = 93.3 bits (102), Expect = 2e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 11195 TCGACCACTACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTG 11254 ||||| || | || || |||| | ||||| || ||||| ||||||||||| || || Sbjct 898 TCGACAACAATTTCAGTCGTGTATCGATCCTGACCATCCTGCCCCTGCCACTTACGTGTC 957 Query 11255 CGTAGGCTGCCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCG 11314 | || |||||||||| || || | ||||| || || || ||||| ||||| || Sbjct 958 TGGAGCTTGCCTTCGATATAAACTTTTGAGCCTTTACGAAGATATTGTTGCGCGATCTCA 1017 Query 11315 GCCAGCCGGCCAAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGT 11373 |||||| ||| || | || || || |||||||| || ||||||||||| || || Sbjct 1018 GCCAGCTTGCCGAACACAACAACACGATGCCACTCTGTTTTTTCCTGCTGCTGCCCAGT 1076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208446337829548