Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq20156 114 2e-20 seq2620 98.7 1e-15 >seq20156 Length=513389 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||| ||||| || ||||| || | | ||||| | || | |||||||| | ||| Sbjct 226788 TTCAAACTCTTCGCCCCAGACGTCACTGAGGCCAGGGCTCTCGTGGGGACACATGAGCGA 226729 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| ||||||| | || ||||| ||||| || ||||||||||||||||| || || Sbjct 226728 CCAATCTCCGTTCTGCTCAACTCGCTTCATGAACAGATCAGGAATCCAAAGGGCGTAGAA 226669 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 ||||| || | ||| |||||||| || || || ||||| | ||||||||| | | Sbjct 226668 CAGATCCCTCGCTCTCTGTTCCTCCTTGCCGGTGTTCTTGCGACAATCGAGGAAATCAAA 226609 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364 || || | ||||| || |||| ||| ||||| | ||||||| || Sbjct 226608 AACGTCTGCGTGCCATGGCTCCAGGTAGATGGCAAACGCTCCAGGGCG 226561 Score = 102 bits (112), Expect = 1e-16 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 63366 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63425 ||||||||||| ||||| | || | ||| ||||| || || |||| ||||||||| | Sbjct 226506 TTGTTTCCTCCTTGATCAACATAGCGAGCAGTGTTGTTGTAGACTCGCAACATTGGCAGC 226447 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTAC 63483 | ||||||||| | || ||||| ||||| || | || ||| |||| ||||| | | Sbjct 226446 AAACCGTTTGAAGTGCCGTTGGTCCCGGAAATGAAACTACCAGTGGCGCGAATGCAATGG 226387 Query 63484 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63543 ||| || || || ||||| || | || || || | || || | || || |||| Sbjct 226386 ACGTTG--AGCCCGATGCCCCCAGCACTCTTGGAAATGAGCGCACACTGCTTCAAGGTGT 226329 Query 63544 CATAGATACCCTCTATGCTATC 63565 | ||||||||||| |||||||| Sbjct 226328 CGTAGATACCCTCAATGCTATC 226307 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 62265 ATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGA 62324 || || | |||||| || ||||| ||||| | | | || || | | | | || | Sbjct 227964 ATCATGCGATTCTTCATGTCATCGTTCCACAGTCCATTTTCAGTCAGATCCTTCAGTAAG 227905 Query 62325 TGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 62384 || | || || || || ||||||||||| | |||| |||||||| || || || || Sbjct 227904 TGGTGGTTGACGACCTGGAATTCTCCAGAGAGAACTCGTCGAGTGTAGATGTTGCTAGTG 227845 Query 62385 TACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 62444 || ||||| |||||||| ||||| | ||| ||||| ||||| || || ||||| || Sbjct 227844 TATGGTTCAGTTGACTCATTGTTTCCGAGAATCTGAGCGGTTGAGGCGGTTGGCATTGGA 227785 Query 62445 GCCA 62448 |||| Sbjct 227784 GCCA 227781 >seq2620 Length=811290 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33690 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33749 ||||||||| || ||||| || ||||| || ||||| |||| ||||| || || | Sbjct 744367 ATTTTCATTAACAATTCCATCGCTGGCAGCGAAAAAAGCCAGAACATGAGAAATGAAGTG 744426 Query 33750 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 33809 ||||||||| | || | | ||| | | | ||||| || | || || || || Sbjct 744427 ACGCTCGTCTGGTTTCAGCTGCTCCCAGTGAGAAACGTCTTTTGAGAGGTCGACCTCCTC 744486 Query 33810 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGAT 33869 | ||||| || || || || || ||||| ||||| | ||||||||||| ||||| || Sbjct 744487 TGCCGTCCAGAAAGACGCTTCAGCTTTTTTGTACATTTGCCAGATGTCATGGTATTGTAT 744546 Query 33870 TGGGAAAATAACAAATC 33886 ||||||||| || |||| Sbjct 744547 TGGGAAAATGACGAATC 744563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622785210367480