Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq18747 86.0 5e-12 seq9036 84.2 2e-11 >seq18747 Length=106157 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | ||| |||| || || ||||||||||| || |||||||||||| | Sbjct 22517 CCTCCTCTCAGACGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 22458 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| ||| ||||| ||| | || | | ||| || || || Sbjct 22457 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGATCTGGGGGA 22398 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || |||||| | | | ||||| ||||||| Sbjct 22397 ATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCTGAGGGCTCCA 22340 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||| || || ||||| || || || || || ||||||||| Sbjct 22339 CCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 22290 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | | ||| |||| || || ||||||||||| || |||||||||||| | Sbjct 23201 CCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 23142 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| ||| ||||| ||| | || | | ||| || || || Sbjct 23141 AGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGA 23082 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || ||| ||||| | | | ||||| |||||| Sbjct 23081 ATGCCTTCCTTGTCCTGGATCTTGGCT--TTCACATTCTCAATGGTGTCCGAGGGCTCAA 23024 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| || || || || || |||||||| |||||||| Sbjct 23023 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 22975 >seq9036 Length=11236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | | ||| |||| || || ||||||||||| || |||||||||||| | Sbjct 10527 CCTCCTCTCAAACGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 10586 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| ||| ||||| ||| | || | | ||| || || || Sbjct 10587 AGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGA 10646 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || ||| ||||| | | | |||||| |||||| Sbjct 10647 ATGCCTTCCTTGTCCTGGATCTTGGCT--TTCACATTCTCAATGGTGTCGGAGGGCTCAA 10704 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| || || || || || |||||||| |||||||| Sbjct 10705 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 10753 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | | ||| |||| || || ||||||||||| || |||||||||||| | Sbjct 10755 CCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 10814 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| ||| ||||| ||| | || | | ||| || || || Sbjct 10815 AGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGA 10874 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || ||| ||||| | | | |||||| |||||| Sbjct 10875 ATGCCTTCCTTGTCCTGGATCTTGGCT--TTCACATTCTCAATGGTGTCGGAGGGCTCAA 10932 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| || || || || || |||||||| |||||||| Sbjct 10933 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 10981 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | | ||| |||| || || ||||||||||| || |||||||||||| | Sbjct 10983 CCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 11042 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| ||| ||||| ||| | || | | ||| || || || Sbjct 11043 AGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGA 11102 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || ||| ||||| | | | |||||| |||||| Sbjct 11103 ATGCCTTCCTTGTCCTGGATCTTGGCT--TTCACATTCTCAATGGTGTCGGAGGGCTCAA 11160 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| || || || || || |||||||| |||||||| Sbjct 11161 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 11209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404985295380970