Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq20156 118 1e-21 seq2620 98.7 1e-15 >seq20156 Length=513389 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||| ||||| || ||||| || | || ||||| | || | |||||||| | ||| Sbjct 226788 TTCAAACTCTTCGCCCCAGACGTCACTGAGGCCAGGGCTCTCGTGGGGACACATGAGCGA 226729 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| ||||||| | || ||||| ||||| || ||||||||||||||||| || || Sbjct 226728 CCAATCTCCGTTCTGCTCAACTCGCTTCATGAACAGATCAGGAATCCAAAGGGCGTAGAA 226669 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 ||||| || | ||| |||||||| || || || ||||| | ||||||||| | | Sbjct 226668 CAGATCCCTCGCTCTCTGTTCCTCCTTGCCGGTGTTCTTGCGACAATCGAGGAAATCAAA 226609 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63219 || || | ||||| || |||| ||| ||||| | ||||||| || Sbjct 226608 AACGTCTGCGTGCCATGGCTCCAGGTAGATGGCAAACGCTCCAGGGCG 226561 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 63221 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63280 ||||||||||| ||||| | || | ||| ||||| || || |||| ||||||||| | Sbjct 226506 TTGTTTCCTCCTTGATCAACATAGCGAGCAGTGTTGTTGTAGACTCGCAACATTGGCAGC 226447 Query 63281 ATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTAC 63338 | ||| || || || || |||||||| || || | || ||| |||| ||||| | | Sbjct 226446 AAACCGTTTGAAGTGCCGTTGGTCCCGGAAATGAAACTACCAGTGGCGCGAATGCAATGG 226387 Query 63339 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 63398 ||| || || || ||||| || | || || || | || || | || || || | Sbjct 226386 ACGTTG--AGCCCGATGCCCCCAGCACTCTTGGAAATGAGCGCACACTGCTTCAAGGTGT 226329 Query 63399 CATAGATGCCCTCTATACTATC 63420 | ||||| ||||| || ||||| Sbjct 226328 CGTAGATACCCTCAATGCTATC 226307 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 62120 ATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGA 62179 || || | |||||| || ||||| ||||| | | | || || | | | | || | Sbjct 227964 ATCATGCGATTCTTCATGTCATCGTTCCACAGTCCATTTTCAGTCAGATCCTTCAGTAAG 227905 Query 62180 TGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 62239 || | || || || || ||||||||||| | |||| |||||||| || || || || Sbjct 227904 TGGTGGTTGACGACCTGGAATTCTCCAGAGAGAACTCGTCGAGTGTAGATGTTGCTAGTG 227845 Query 62240 TACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 62299 || ||||| |||||||| ||||| | ||| ||||| ||||| || || ||||| || Sbjct 227844 TATGGTTCAGTTGACTCATTGTTTCCGAGAATCTGAGCGGTTGAGGCGGTTGGCATTGGA 227785 Query 62300 GCCA 62303 |||| Sbjct 227784 GCCA 227781 >seq2620 Length=811290 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 33047 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33106 ||||||||| || ||||| || ||||| || ||||| |||| ||||| || || | Sbjct 744367 ATTTTCATTAACAATTCCATCGCTGGCAGCGAAAAAAGCCAGAACATGAGAAATGAAGTG 744426 Query 33107 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 33166 ||||||||| | || | | ||| | | | ||||| || | || || || || Sbjct 744427 ACGCTCGTCTGGTTTCAGCTGCTCCCAGTGAGAAACGTCTTTTGAGAGGTCGACCTCCTC 744486 Query 33167 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 33226 | ||||| || || || || || ||||| ||||| | |||||||||||| ||||| || Sbjct 744487 TGCCGTCCAGAAAGACGCTTCAGCTTTTTTGTACATTTGCCAGATGTCATGGTATTGTAT 744546 Query 33227 TGGAAAAATAACAAATC 33243 ||| ||||| || |||| Sbjct 744547 TGGGAAAATGACGAATC 744563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633467231918800