Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq18747 127 2e-24 seq16762 93.3 4e-14 >seq18747 Length=106157 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | ||||| || | ||||| | || |||||| | || Sbjct 22290 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTGGAGCCCTC 22349 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| ||||| || ||| ||||| ||||| ||||| || || || Sbjct 22350 AGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 22409 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||||||||| ||| | ||||||| |||||| || |||| ||||| Sbjct 22410 GCAGAGATTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAA 22469 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || || ||||| | || |||||||| Sbjct 22470 CATCCAGAAGGAGTCCACCCTTCACTTGGTGCTGCGTCTGAGAGGAGG 22517 >seq16762 Length=602608 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 51085 ATAC-AACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAA 51143 |||| |||| |||||| ||||||||| || ||||||| ||||| | |||||| || | Sbjct 343653 ATACGAACCAACATAACCGTTAGGATCCCGTCCATCCAGACTGTACTTATCGTTGAGGTA 343712 Query 51144 TATGGCATAACCCAATGCCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCA 51203 || || | |||| | | || | | |||||||| | || ||||| ||||| Sbjct 343713 AATCGCTTCCTCCAAACCTCTTTCCGGCGTTTCAGTCCATTCAAGGATCTTCTTCGCCCA 343772 Query 51204 GTACATGCGCATGTAACCGTGCATCTTGCCCTC 51236 ||||||||||| | |||||||||||||||| || Sbjct 343773 GTACATGCGCAGGAAACCGTGCATCTTGCCTTC 343805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433218135508445