Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq9036 111 1e-19 seq18747 105 6e-18 >seq9036 Length=11236 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||||||| || ||| |||||| ||||| || ||| Sbjct 10557 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGTTGCTTGCCA 10616 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || || ||||||||||| ||||| ||||| ||| Sbjct 10617 GCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 10676 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| || || || || | ||| | || ||||| || || || Sbjct 10677 ACATTCTCAATGGTGTCGGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTC 10736 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 10737 TTGACAAAGATCTGCATGCCT 10757 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||||||| || ||| |||||| ||||| || ||| Sbjct 10785 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGTTGCTTGCCA 10844 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || || ||||||||||| ||||| ||||| ||| Sbjct 10845 GCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 10904 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| || || || || | ||| | || ||||| || || || Sbjct 10905 ACATTCTCAATGGTGTCGGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTC 10964 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 10965 TTGACAAAGATCTGCATGCCT 10985 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||||||| || ||| |||||| ||||| || ||| Sbjct 11013 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGTTGCTTGCCA 11072 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || || ||||||||||| ||||| ||||| ||| Sbjct 11073 GCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 11132 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| || || || || | ||| | || ||||| || || || Sbjct 11133 ACATTCTCAATGGTGTCGGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTC 11192 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 11193 TTGACAAAGATCTGCATGCCT 11213 >seq18747 Length=106157 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||||||| || ||| |||||| ||||| || ||| Sbjct 22943 GTGGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGTTGCTTGCCA 22884 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | || || || || ||||||||||| ||||| ||||| ||| Sbjct 22883 GCAAAGATCAATCTTTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 22824 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || || | ||| | || ||||| || || || Sbjct 22823 ACATTCTCAATGGTGTCTGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTC 22764 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 22763 TTGACAAAGATCTGCATGCCT 22743 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || |||| || || |||||| ||||| || ||| Sbjct 24083 GTGGACTCTTTCTGGATGTTGTAGTCACTCAGGGTGCGGCCATCTTCCAGTTGCTTGCCA 24024 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || || ||||||||||| ||||| ||||| ||| Sbjct 24023 GCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 23964 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| || || || || | ||| | || ||||| || || || Sbjct 23963 ACATTCTCAATGGTGTCGGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTC 23904 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 23903 TTGACAAAGATCTGCATGCCT 23883 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || |||| || ||| |||||| ||||| || ||| Sbjct 24311 GTGGACTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCATCTTCCAGTTGCTTGCCA 24252 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || || ||||||||||| ||||| ||||| ||| Sbjct 24251 GCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 24192 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| || || || || | ||| | || ||||| || || || Sbjct 24191 ACATTCTCAATGGTGTCGGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTC 24132 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 24131 TTGACAAAGATCTGCATGCCT 24111 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||||||| || || |||||| ||||| || ||| Sbjct 23171 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCTTCCAGTTGCTTGCCA 23112 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || || ||||||||||| ||||| ||||| ||| Sbjct 23111 GCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 23052 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || || | ||| | || ||||| || || || Sbjct 23051 ACATTCTCAATGGTGTCCGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTC 22992 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 22991 TTGACAAAGATCTGCATGCCT 22971 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||||||| || ||| |||||| ||||| || ||| Sbjct 23399 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGTTGCTTGCCA 23340 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || || ||||||||||| ||||| ||||| || Sbjct 23339 GCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 23280 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || || | ||| | || ||||| || || || Sbjct 23279 ACATTCTCAATGGTGTCTGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTC 23220 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 23219 TTGACAAAGATCTGCATGCCT 23199 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || |||| || ||| |||||| ||||| || ||| Sbjct 23627 GTGGACTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCATCTTCCAGTTGCTTGCCA 23568 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || || ||||||||||| ||||| ||||| ||| Sbjct 23567 GCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 23508 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || || | ||| | || ||||| || || || Sbjct 23507 ACATTCTCAATGGTGTCTGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTC 23448 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 23447 TTGACAAAGATCTGCATGCCT 23427 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || |||| || ||| |||||| ||||| || ||| Sbjct 23855 GTGGACTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCATCTTCCAGTTGCTTGCCA 23796 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || || ||||||||||| ||||| ||||| ||| Sbjct 23795 GCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 23736 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || || | ||| | || ||||| || || || Sbjct 23735 ACATTCTCAATGGTGTCCGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTC 23676 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 23675 TTGACAAAGATCTGCATGCCT 23655 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||||||| || ||| |||||| ||||| || || Sbjct 22487 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGTTGCTTGCCG 22428 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || || || ||||||||||| ||||| ||||| || Sbjct 22427 GCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 22368 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || || | ||| | || |||||||| || || Sbjct 22367 ACATTCTCAATGGTGTCTGAGGGCTCCACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTC 22308 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 22307 TTCACGAAGATCTGCAT 22291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420027880568436