Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq18747 109 1e-18 seq18392 87.8 4e-12 seq10961 87.8 4e-12 >seq18747 Length=106157 Score = 109 bits (120), Expect = 1e-18 Identities = 143/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || |||||| || ||||| || ||||| | ||| || || || ||| Sbjct 22481 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAG 22422 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| ||| |||||| || ||||| || |||||||| || || ||||| Sbjct 22421 ATCAATCTCTGCTGA---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACA 22365 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || || ||||| ||||| ||||| || ||||| Sbjct 22364 TTCTCAATGGTGTCTGAGGGCTCCACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTC 22305 Query 288460 ACGAATATCTGCATTAT 288476 ||||| ||||||||||| Sbjct 22304 ACGAAGATCTGCATTAT 22288 >seq18392 Length=131348 Score = 87.8 bits (96), Expect = 4e-12 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 194922 CCAGGATGGCCGAGTTGGTTAAGGCGATCGCCTCAAGAGCGATTGGATGTTATGTCCGCG 194981 ||||||||||||||| |||||||||| | | || |||| | | ||||||| ||||||||| Sbjct 32812 CCAGGATGGCCGAGT-GGTTAAGGCGTTGGACTTAAGATCCAATGGATGT-ATGTCCGCG 32755 Query 194982 TAGGTTCGAGCCCTACTTCTGG 195003 | ||||||| ||| |||||||| Sbjct 32754 TGGGTTCGAACCCCACTTCTGG 32733 >seq10961 Length=1251 Score = 87.8 bits (96), Expect = 4e-12 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 194922 CCAGGATGGCCGAGTTGGTTAAGGCGATCGCCTCAAGAGCGATTGGATGTTATGTCCGCG 194981 ||||||||||||||| |||||||||| | | || |||| | | |||| || ||||||||| Sbjct 942 CCAGGATGGCCGAGT-GGTTAAGGCGTTGGACTTAAGATCCAATGGACGT-ATGTCCGCG 999 Query 194982 TAGGTTCGAGCCCTACTTCTGG 195003 | ||||||| |||||||||||| Sbjct 1000 TGGGTTCGAACCCTACTTCTGG 1021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179339976759434