Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3888 104 3e-17 seq12650 86.0 7e-12 seq9740 84.2 2e-11 seq830 84.2 2e-11 seq754 84.2 2e-11 seq7439 82.4 8e-11 >seq3888 Length=367485 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | |||||||||||| || | ||| |||||| || || ||||| || | Sbjct 211489 CCACCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 211430 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || || ||||| ||||| || || | || |||||| || | || Sbjct 211429 AGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 211370 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| ||| || || | || | | ||||| | ||||| Sbjct 211369 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCACC 211310 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 211309 TCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 211263 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | |||||||||||| || | ||| |||||| || || ||||| || | Sbjct 211717 CCACCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 211658 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || || ||||| ||||| || || | || |||||| || | || Sbjct 211657 AGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 211598 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| ||| || || | || | | ||||| | ||||| Sbjct 211597 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCACC 211538 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 211537 TCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 211491 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | |||||||||||| || | ||| |||||| || || ||||| || | Sbjct 211945 CCCCCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 211886 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || || ||||| ||||| || || | || |||||| || | || Sbjct 211885 AGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 211826 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| ||| || || | || | | ||||| | ||||| Sbjct 211825 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCTATGGTGTCTGAGGGCTCCACC 211766 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 211765 TCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 211719 >seq12650 Length=210450 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 ||| |||||| ||||||||||||||||||||| |||||||||||||||||| | ||||| Sbjct 178851 AATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACTAGGAT 178910 Query 57080 TG 57081 || Sbjct 178911 TG 178912 >seq9740 Length=1327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| |||| | | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 617 AAAAATTGCCTCCCAGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 558 Query 57058 TCACCACTATACTACCGAGGATTG 57081 |||||||||||||| | |||| || Sbjct 557 TCACCACTATACTAACTAGGAATG 534 >seq830 Length=499793 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| |||| | | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 499300 AAAAATTGCCTCCCAGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 499241 Query 57058 TCACCACTATACTACCGAGGATTG 57081 |||||||||||||| | |||| || Sbjct 499240 TCACCACTATACTAACTAGGAATG 499217 >seq754 Length=45278 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| |||| | | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 365 AAAAATTGCCTCCCAGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 306 Query 57058 TCACCACTATACTACCGAGGATTG 57081 |||||||||||||| | |||| || Sbjct 305 TCACCACTATACTAACTAGGAATG 282 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| |||| | | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 4836 AAAAATTGCCTCCCAGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4777 Query 57058 TCACCACTATACTACCGAGGATTG 57081 |||||||||||||| | |||| || Sbjct 4776 TCACCACTATACTAACTAGGAATG 4753 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| |||| | | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 5903 AAAAATTGCCTCCCAGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 5844 Query 57058 TCACCACTATACTACCGAGGATTG 57081 |||||||||||||| | |||| || Sbjct 5843 TCACCACTATACTAACTAGGAATG 5820 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||| |||| | | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 7353 AAAAATTGCCTCCCAGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 7294 Query 57058 TCACCACTATACTACCGAGGATTG 57081 |||||||||||||| | |||| || Sbjct 7293 TCACCACTATACTAACTAGGAATG 7270 >seq7439 Length=281474 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 ||| |||||| ||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 70621 AATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACTAGGAA 70680 Query 57080 TGAATATA 57087 || |||| Sbjct 70681 TGGCTATA 70688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543071544301520