Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq18747 91.5 1e-13 seq13439 89.7 5e-13 seq19936 84.2 2e-11 >seq18747 Length=106157 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || || || |||||||| || | |||||| | ||| Sbjct 22502 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCT 22443 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || |||||||||||| | || | | |||||| || || ||||| ||||| || || Sbjct 22442 TCCAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 22383 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || || ||||| || | || | ||| Sbjct 22382 TGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCACCTCAAGGGTGATTGTC 22323 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||||| | || || ||||| || |||||| Sbjct 22322 TTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 22290 >seq13439 Length=213493 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || || ||||||||||| || | |||||| | || Sbjct 37600 AGCACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCACTCAGGGTGCGACCATCC 37541 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| ||| | || | | |||||| || || || || || || || ||| Sbjct 37540 TCAAGCTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCT 37481 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | |||||| | ||||| || | || | |||| Sbjct 37480 TGGATCTTGGCCTTGACATTTTCGATCGTATCAGATGGCTCCACCTCAAGGGTGATGGTC 37421 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 37420 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 37389 >seq19936 Length=449466 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | ||||| || || || |||||||| || | |||||| | || Sbjct 233827 AGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 233886 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 |||||||||||||| ||| | || | || |||||| |||||||| |||||| Sbjct 233887 TCAAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGGATTCCT 233937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499514873615320