Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq13439 131 2e-25 seq3888 129 6e-25 seq19936 82.4 7e-11 >seq13439 Length=213493 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | || ||||| || ||||| ||||| || | || |||||| | Sbjct 37603 CGCAGCACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCACTCAGGGTGCGACCA 37544 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| ||||||||| ||||||||| || || |||||||||||| Sbjct 37543 TCCTCAAGCTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCCTCCTTG 37484 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||||| | ||||| || || | ||| || || | ||| | Sbjct 37483 TCTTGGATCTTGGCCTTGACATTTTCGATCGTATCAGATGGCTCCACCTCAAGGGTGATG 37424 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||||| |||||||| Sbjct 37423 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 37389 >seq3888 Length=367485 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||||||||| || | || ||||| || || || ||||| |||| || |||||| | Sbjct 211477 CGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCA 211418 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || |||||||| ||||||||| ||||||||| || || ||||| |||||| Sbjct 211417 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCCTTG 211358 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | ||| || || | ||| | Sbjct 211357 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCACCTCAAGGGTGATG 211298 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || || || || ||||| ||||||||| Sbjct 211297 GTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCATG 211262 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||||||||| || | || ||||| || || || ||||| |||| || |||||| | Sbjct 211705 CGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCA 211646 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || |||||||| ||||||||| ||||||||| || || ||||| |||||| Sbjct 211645 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCCTTG 211586 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | ||| || || | ||| | Sbjct 211585 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCACCTCAAGGGTGATG 211526 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || || || || ||||| ||||||||| Sbjct 211525 GTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCATG 211490 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||||||||| || | || ||||| || || || ||||| |||| || |||||| | Sbjct 211933 CGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCA 211874 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || |||||||| ||||||||| ||||||||| || || ||||| |||||| Sbjct 211873 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCCTTG 211814 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | ||| || || | ||| | Sbjct 211813 TCCTGGATCTTGGCCTTCACATTCTCTATGGTGTCTGAGGGCTCCACCTCAAGGGTGATG 211754 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || || || || ||||| ||||||||| Sbjct 211753 GTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCATG 211718 >seq19936 Length=449466 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| ||| | || ||||| || || || ||||| |||| || ||||| | Sbjct 233824 CGCAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 233883 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCC 127011 || || ||||| || ||||| ||||||| | ||||||||||||||| || || Sbjct 233884 TCCTCAAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCGGGAGGGATTCC 233936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475377151960720