Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq9036 96.9 3e-15 seq18747 95.1 1e-14 >seq9036 Length=11236 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || ||||| | ||| | ||| |||| ||| Sbjct 10551 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGTTGC 10610 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| ||||| || || ||||||||||| || || || || || Sbjct 10611 TTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 10670 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | ||||||||| | ||| || || || |||| || ||||| || Sbjct 10671 GCTTTCACATTCTCAATGGTGTCGGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTG 10730 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| Sbjct 10731 AGGGTCTTGACAAAGATCTGCAT 10753 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || ||||| | ||| | ||| |||| ||| Sbjct 10779 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGTTGC 10838 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| ||||| || || ||||||||||| || || || || || Sbjct 10839 TTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 10898 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | ||||||||| | ||| || || || |||| || ||||| || Sbjct 10899 GCTTTCACATTCTCAATGGTGTCGGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTG 10958 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| Sbjct 10959 AGGGTCTTGACAAAGATCTGCAT 10981 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || ||||| | ||| | ||| |||| ||| Sbjct 11007 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGTTGC 11066 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| ||||| || || ||||||||||| || || || || || Sbjct 11067 TTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 11126 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | ||||||||| | ||| || || || |||| || ||||| || Sbjct 11127 GCTTTCACATTCTCAATGGTGTCGGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTG 11186 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| Sbjct 11187 AGGGTCTTGACAAAGATCTGCAT 11209 >seq18747 Length=106157 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || | || ||| | || || || || ||||| ||||| || || ||| Sbjct 23432 ATGCCTCCTCTCAGACGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 23373 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | ||| |||| ||| || || || | ||||||| ||||| || || Sbjct 23372 CTCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGG 23313 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || || || |||| || | |||||| || | ||| Sbjct 23312 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCTGAGGGCTCA 23253 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || ||||| || || || || ||||| || ||||| Sbjct 23252 ACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 23203 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || || || ||||| || || ||||| | ||| | ||| |||| ||| Sbjct 22949 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGTTGC 22890 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| |||||| || || ||||||||||| || || || || || Sbjct 22889 TTGCCAGCAAAGATCAATCTTTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 22830 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | |||||| || | ||| || || || |||| || ||||| || Sbjct 22829 GCTTTCACATTCTCAATGGTGTCTGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTG 22770 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| Sbjct 22769 AGGGTCTTGACAAAGATCTGCAT 22747 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || || || | ||| | ||| |||| ||| Sbjct 24317 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCATCTTCCAGTTGC 24258 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| ||||| || || ||||||||||| || || || || || Sbjct 24257 TTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 24198 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | ||||||||| | ||| || || || |||| || ||||| || Sbjct 24197 GCTTTCACATTCTCAATGGTGTCGGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTG 24138 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| Sbjct 24137 AGGGTCTTGACAAAGATCTGCAT 24115 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || ||||| | ||| ||| |||| ||| Sbjct 23177 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCTTCCAGTTGC 23118 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| ||||| || || ||||||||||| || || || || || Sbjct 23117 TTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 23058 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | |||||| || | ||| || || || |||| || ||||| || Sbjct 23057 GCTTTCACATTCTCAATGGTGTCCGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTG 22998 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| Sbjct 22997 AGGGTCTTGACAAAGATCTGCAT 22975 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || || || | ||| | ||| |||| ||| Sbjct 23633 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCATCTTCCAGTTGC 23574 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| ||||| || || ||||||||||| || || || || || Sbjct 23573 TTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 23514 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | |||||| || | ||| || || || |||| || ||||| || Sbjct 23513 GCTTTCACATTCTCAATGGTGTCTGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTG 23454 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| Sbjct 23453 AGGGTCTTGACAAAGATCTGCAT 23431 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || || || | ||| | ||| |||| ||| Sbjct 23861 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCATCTTCCAGTTGC 23802 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| ||||| || || ||||||||||| || || || || || Sbjct 23801 TTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 23742 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | |||||| || | ||| || || || |||| || ||||| || Sbjct 23741 GCTTTCACATTCTCAATGGTGTCCGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTG 23682 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| Sbjct 23681 AGGGTCTTGACAAAGATCTGCAT 23659 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || | || ||| | || || || || ||||| ||||| || || ||| Sbjct 22520 ATGCCTCCTCTCAGACGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 22461 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | ||| |||| ||| || || || | ||||||| ||||| || || Sbjct 22460 CTCAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGATCTGGG 22401 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || || || || | || | |||||| || | ||| Sbjct 22400 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCC 22341 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || |||||||| || || || || || || ||||| Sbjct 22340 ACCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 22291 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || || || ||||| || || || || | ||| ||| |||| ||| Sbjct 24089 TGAAGGGTGGACTCTTTCTGGATGTTGTAGTCACTCAGGGTGCGGCCATCTTCCAGTTGC 24030 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| ||||| || || ||||||||||| || || || || || Sbjct 24029 TTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 23970 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | ||||||||| | ||| || || || |||| || ||||| || Sbjct 23969 GCTTTCACATTCTCAATGGTGTCGGAGGGCTCAACCTCAAGGGTAATGGTCTTGCCAGTG 23910 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || ||||| Sbjct 23909 AGGGTCTTGACAAAGATCTGCAT 23887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451885662217880