Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq13439 120 3e-22 seq18747 113 5e-20 seq3888 111 2e-19 >seq13439 Length=213493 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | ||||| ||||| || | || |||||| || || |||||||| Sbjct 37617 TGCCTCCTCTCAGACGCAGCACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAC 37558 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || ||||||||||| || || ||||| | |||||| || | | Sbjct 37557 TCAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 37498 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| | | | ||| || | |||| Sbjct 37497 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATCGTATCAGATGGCTCCA 37438 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||||||||| || || |||||||| ||||| Sbjct 37437 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 37389 >seq18747 Length=106157 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | ||||| ||||| || | || |||||| ||||| ||||||||| Sbjct 22519 TGCCTCCTCTCAGACGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 22460 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || || ||||||||||| || ||||| | |||||| || | | Sbjct 22459 TCAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGATCTGGGG 22400 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | || | | ||||| | |||| Sbjct 22399 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCA 22340 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | || | ||||| || ||||| || || || || || ||||| |||||| Sbjct 22339 CCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 22290 >seq3888 Length=367485 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||||||||||| || | || |||||| ||||| ||||||||| Sbjct 211491 TGCCACCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 211432 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || || ||||| || || || ||||| | |||||| || | | Sbjct 211431 TCAGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGG 211372 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | || | | ||||| | |||| Sbjct 211371 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCA 211312 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| || || || || |||||||| ||||| Sbjct 211311 CCTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 211263 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||||||||||| || | || |||||| ||||| ||||||||| Sbjct 211719 TGCCACCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 211660 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || || ||||| || || || ||||| | |||||| || | | Sbjct 211659 TCAGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGG 211600 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | || | | ||||| | |||| Sbjct 211599 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCA 211540 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| || || || || |||||||| ||||| Sbjct 211539 CCTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 211491 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||||||||| || | || |||||| ||||| ||||||||| Sbjct 211945 CCCCCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 211886 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || || ||||| || || || ||||| | |||||| || | || Sbjct 211885 AGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 211826 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | || | | ||||| | ||||| Sbjct 211825 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCTATGGTGTCTGAGGGCTCCACC 211766 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| || || || || |||||||| ||||| Sbjct 211765 TCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 211719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565091416819560