Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq16867 82.4 2e-11 seq14711 82.4 2e-11 >seq16867 Length=7440 Score = 82.4 bits (90), Expect = 2e-11 Identities = 143/207 (69%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 25442 TTTCCTCGGCACGAATTCGCGAACGGCGCAGAGCTATCACGGCAATTTCTATTTCGACGA 25501 ||| ||| |||| ||||| || || |||||||| |||| ||||||||||| || || Sbjct 1425 TTTTCTCAGCACCAATTCCATGACCGCTCAGAGCTACAACGGAAATTTCTATTTTGATGA 1484 Query 25502 GTATTTTTGGGTGAGCGGGTTTCGCCAGCTCAACAAGGTTGCATCGGGCATGGCGATGCA 25561 |||||| ||| | | ||| | || |||||||| || | | |||||| | Sbjct 1485 GTATTTCTGGACCCGGGATTTTGAAAAACTGAACAAGGTGGCCGCAGCCATGGCCA---G 1541 Query 25562 CAAGAAATGG---CGAAAGACGTATTTTTCAACGCCGTCGAGCATCACGCACGAGGCTTA 25618 | ||||| || || || || ||||| || || ||||| ||| | ||| |||||| Sbjct 1542 CCAGAAACGGTTCCGGAAAACCTATTTCTCCACCCCGTCCGCCATGAGCCACCCGGCTTA 1601 Query 25619 CACCTTCTGGAGTGGCGAGCACTACAA 25645 || ||||||||||||| ||||| Sbjct 1602 TGAGTTATGGAGTGGCGAGCGTTACAA 1628 >seq14711 Length=7958 Score = 82.4 bits (90), Expect = 2e-11 Identities = 143/207 (69%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 25442 TTTCCTCGGCACGAATTCGCGAACGGCGCAGAGCTATCACGGCAATTTCTATTTCGACGA 25501 ||| ||| |||| ||||| || || |||||||| |||| ||||||||||| || || Sbjct 913 TTTTCTCAGCACCAATTCCATGACCGCTCAGAGCTACAACGGAAATTTCTATTTTGATGA 854 Query 25502 GTATTTTTGGGTGAGCGGGTTTCGCCAGCTCAACAAGGTTGCATCGGGCATGGCGATGCA 25561 |||||| ||| | | ||| | || |||||||| || | | |||||| | Sbjct 853 GTATTTCTGGACCCGGGATTTTGAAAAACTGAACAAGGTGGCCGCAGCCATGGCCA---G 797 Query 25562 CAAGAAATGG---CGAAAGACGTATTTTTCAACGCCGTCGAGCATCACGCACGAGGCTTA 25618 | ||||| || || || || ||||| || || ||||| ||| | ||| |||||| Sbjct 796 CCAGAAACGGTTCCGGAAAACCTATTTCTCCACCCCGTCCGCCATGAGCCACCCGGCTTA 737 Query 25619 CACCTTCTGGAGTGGCGAGCACTACAA 25645 || ||||||||||||| ||||| Sbjct 736 TGAGTTATGGAGTGGCGAGCGTTACAA 710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103267282998594