Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4258 107 2e-17 seq3051 104 2e-16 seq18866 96.9 3e-14 seq8071 91.5 1e-12 seq9016 87.8 1e-11 >seq4258 Length=342456 Score = 107 bits (118), Expect = 2e-17 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 |||| || ||||| ||||| || || |||||||| || || || || |||||||| Sbjct 130916 TTGGGCAGGAAGTGCGAGATGCTGTCATCACTGTACCTGCCTACTTCAACGACTCACAGA 130975 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 | ||||| || || || ||||| | || || || || |||||||| || || ||||||| Sbjct 130976 GACAAGCAACGAAGGACGCTGGTCACATCGCAGGCCTCAATGTTCTCCGAATCATCAATG 131035 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA--ACATAATGATCAAGAACTTAA 550557 | || ||||| ||||| || || ||||| || || || || | | | |||| || Sbjct 131036 AGCCGACTGCGGCTGCCCTGGCGTATGGCCTCGACAAGAACCTCACAGGCGAGAAG--AA 131093 Query 550558 TGTACTCATCTTTGA 550572 ||| ||||||||||| Sbjct 131094 TGTGCTCATCTTTGA 131108 >seq3051 Length=18558 Score = 104 bits (114), Expect = 2e-16 Identities = 131/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 ||||| || || |||||||| || || || || |||||||| | ||||| || || || Sbjct 13167 GATGCTGTCATTACTGTACCTGCCTACTTCAACGACTCACAGAGACAAGCAACGAAGGAC 13108 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 ||||| | || || || || |||||||| || || |||||||| || ||||| ||||| Sbjct 13107 GCTGGCCACATCGCAGGCCTCAATGTTCTCCGAATCATCAATGAGCCGACTGCGGCTGCC 13048 Query 550517 CTTGCATATGGACTTGATAA--ACATAATGATCAAGAACTTAATGTACTCATCTTTGA 550572 || || ||||| || || || || | | | |||| ||||| ||||||||||| Sbjct 13047 CTGGCGTATGGCCTCGACAAGAACCTCACAGGCGAGAAG--AATGTGCTCATCTTTGA 12992 >seq18866 Length=138472 Score = 96.9 bits (106), Expect = 3e-14 Identities = 355/546 (65%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || || || |||||||| || || || ||||| | | |||| || || || Sbjct 29500 GGCATTGACTTGGGAACCACCTACTCCTGCGTGGGTGTGTTTGAGCATGGCAAGGTGGAG 29559 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || || ||||||||||| || ||| | || ||||| || || || ||||||| || | Sbjct 29560 ATCATCGCCAATGATCAGGGAAACCGCACCACTCCCTCATACGTGGCTTTCACCGATTCA 29619 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATACT 550174 |||| | | | || ||| | || || |||| |||| || ||||| ||||| || Sbjct 29620 GAACGTCTGATCGGAGATTCCGCCAAGAATCAGGTTGCCA-TG--AATCCCACCAACACC 29676 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 || ||||| || || ||| | ||||| | ||||| |||| | ||||| | || Sbjct 29677 ATCTTTGACGCCAAGCGTCTGATTGGTCGTCGTTTTGATGACCACGCAGTTCAAGACGAC 29736 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTAC 550293 |||||| ||||| ||||| || | |||| ||| || || | || ||| | || Sbjct 29737 ATGAAGACCTGGCCCTTCCAGGTTATCAATGACAATGGCAAGCCCAAGATCAAAGTCAAC 29796 Query 550294 TCATGAAGGAT-CTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGA 550352 | |||||| | ||| || | |||||| | | || || ||||| | | | Sbjct 29797 T--ACAAGGATGAGGAGAAATGCTTCTTCCCAGAAGAGGTCTCCTCAATGGTGCTGCTCA 29854 Query 550353 AAATGAAACAAACAGC-CAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAAC 550410 | ||||| | || || || | | | |||| | || || ||||| || || Sbjct 29855 AGATGAAGGAGGTGGCTGAGGGC--TACCTCGGAAAGACCCTCACAGACGCAGTCATCAC 29912 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| || || || || || ||| || ||||| || || || ||||| || || | Sbjct 29913 TGTCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCCACCAAGGATGCCGGTATCATCTC 29972 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| | ||||| || ||||| ||||| || || || || || || |||| || || || Sbjct 29973 CGGAATGAATGTCCTGCGTATCATCAACGAGCCCACAGCCGCAGCCATTGCGTACGGTCT 30032 Query 550531 TGATAA 550536 ||| || Sbjct 30033 TGACAA 30038 >seq8071 Length=1456 Score = 91.5 bits (100), Expect = 1e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 ||||||| || || || ||||| || ||||| || || ||||||||||| |||||||| | Sbjct 1456 TACCAGCTTACTTCAACGACTCCCAGCGTCAGGCCACCAAAGATGCTGGTCGTATTGCCG 1397 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | || | || || |||||||| || ||||||||||| ||| | || ||||| Sbjct 1396 GTCTGGACGTGAAGCGCATTATCAACGAGCCTACTGCTGCGGCATTGGCTTATGG 1342 >seq9016 Length=252749 Score = 87.8 bits (96), Expect = 1e-11 Identities = 246/374 (66%), Gaps = 4/374 (1%) Strand=Plus/Plus Query 552213 CCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACT 552272 || ||||||||||| || || ||||| || | || ||||| || || |||| || Sbjct 235271 CCTGATGAGGCTGTGGCGTACGGTGCAGCTGTGCAGGCAGCAATGCTCACTGGCTCAAAA 235330 Query 552273 GATGAAAAACT-ACAA-AATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAG 552330 || ||| || ||| || | || || | || || ||||| || || || || | | Sbjct 235331 GA--CAAAGCTGTCAAGAACCTCGTGCTCATCGACGTCACTCCACTCTCCCTCGGCATCG 235388 Query 552331 AAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAA 552390 |||||| || ||| ||||||| ||||| ||| | | ||||| || || || || | Sbjct 235389 AAACAGCCGGTGGTGTTATGACCAATCTGATCTCTCGCAATACCACAATCCCGACTACCA 235448 Query 552391 AATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTG 552450 |||| | || || || | || || || ||| ||||| || ||| ||| | Sbjct 235449 AATCAGAGGCCTTCAGCACATACGCCGACAACCAGCCTGGGGTTACCATCCAAGTTTACG 235508 Query 552451 AAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTA 552510 | || |||||| | |||| ||| || || | || ||| ||| | | | || | Sbjct 235509 AGGGCGAAAGAGCCATGACTAGAGACAACAACCTCCTGGGTCGCTTTGAGCTGCATGGCA 235568 Query 552511 TTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATG 552570 | | || ||| || || || || || ||||| | || | ||||| ||||| ||||||| Sbjct 235569 TCCGTCGTGCCCCGCGAGGTGTCCCCCAAATCAATGTCAGCTTCGACATCGACGCCAATG 235628 Query 552571 GAATTTTGAATGTG 552584 | ||| |||| ||| Sbjct 235629 GCATTCTGAACGTG 235642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028195843538470