Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq13439 102 6e-17 seq3888 91.5 1e-13 >seq13439 Length=213493 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || |||| |||||| || || || ||| || ||||| ||||| ||| Sbjct 37616 GCCTCCTCTCAGACGCAGCACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCACT 37557 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || || | |||||| || ||||| |||| || ||| ||||| | ||| Sbjct 37556 CAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGG 37497 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || ||| | | | || || | |||||| Sbjct 37496 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATCGTATCAGATGGCTCCAC 37437 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || || || ||||||| || || ||||| ||||||||| Sbjct 37436 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATC 37388 >seq3888 Length=367485 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || ||||||||||| || || ||| ||| || || || ||||| || Sbjct 211490 GCCACCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 211431 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || |||| ||||| || ||||| |||| || ||| ||||| | ||| Sbjct 211430 CAGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGG 211371 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||| |||||||| ||||| || ||| | | | ||||| | |||||| Sbjct 211370 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCAC 211311 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || || || || | || || ||||| |||||||| Sbjct 211310 CTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 211263 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || ||||||||||| || || ||| ||| || || || ||||| || Sbjct 211718 GCCACCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 211659 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| | || |||| ||||| || ||||| |||| || ||| ||||| | ||| Sbjct 211658 CAGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGG 211599 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||| |||||||| ||||| || ||| | | | ||||| | |||||| Sbjct 211598 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCAC 211539 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || || || || | || || ||||| |||||||| Sbjct 211538 CTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 211491 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || ||||||||||| || || ||| ||| || || || ||||| || Sbjct 211945 CCCCCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 211886 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || |||| ||||| || ||||| |||| || ||| ||||| | ||| Sbjct 211885 AGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 211826 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||||| || ||| | | | ||||| | ||||||| Sbjct 211825 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCTATGGTGTCTGAGGGCTCCACC 211766 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || || | || || ||||| |||||||| Sbjct 211765 TCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 211719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380841018390369