Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq1283 129 1e-25 seq18637 116 9e-22 >seq1283 Length=34873 Score = 129 bits (142), Expect = 1e-25 Identities = 230/335 (69%), Gaps = 3/335 (1%) Strand=Plus/Minus Query 25751 CTATCAAGCATTTGAAACTCACCGCCA---GGACCGACAACAATCTCAGTAGTGTACTGA 25807 || || ||||| || |||| ||| | ||| | || || | |||||| ||||| | Sbjct 31002 CTGTCCAGCATCTGCAACTGACCATTAAACGGATCAACCACGACCTCAGTGGTGTATCGG 30943 Query 25808 TCTTGACCTTGCTGGTTCTGCCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTT 25867 || ||||| | | | ||||||||| || || | | ||||||||| || |||| ||| Sbjct 30942 TCCTGACCGTCTTTATCCTGCCACTTTCGGGTCTGGAGCTTGCCTTCGATATAAACCTTG 30883 Query 25868 GAGCCTTTGCGTGTGTACTCGCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGG 25927 |||||||| ||||| ||| | ||| |||| ||||||| | | ||| || || Sbjct 30882 GAGCCTTTATTGAGGTACTGCTGGGCAATCTCCGCCAGCTTCCCGAAGATCACCACCCGA 30823 Query 25928 TGCCACTCTGTTTTTTCTACCGGCTGCCCTGTCTGCTTGTCTTTGTACTGCTCACTGGTG 25987 ||||| || || ||||| | |||| || || | ||| || || | |||||||||| Sbjct 30822 TGCCATTCGGTCTTTTCCTGCTGCTGGCCGGTGTTCTTATCCTTCCATGCCTCACTGGTG 30763 Query 25988 GCAATGCTTAAATTTGCCACGGCGGTACCGTTAGGCATATACCTAACTTCCGGGTCCTGG 26047 || | | ||| |||||||| | ||| | | | || ||| ||| ||||| || | | Sbjct 30762 GCCAGTGAGAGATTGGCCACGGCTGCACCCTGACCCGTAAACCGAACATCCGGATCGTCG 30703 Query 26048 CCTAAGTTGCCGACAATGATTACCTTGTTAATTCC 26082 || | |||||||| | ||||| ||||| || || Sbjct 30702 CCCAGGTTGCCGATTAGAATTACTTTGTTGATGCC 30668 >seq18637 Length=6726 Score = 116 bits (128), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 25753 ATCAAGCATTTGAAACT---CACCGCCAGGACCGACAACAATCTCAGTAGTGTACTGATC 25809 ||| |||||||| | || ||| | | | |||||||||| ||||| ||||| |||| Sbjct 867 ATCCAGCATTTGTAGCTGTCCACTGAAACCATCGACAACAATTTCAGTCGTGTATCGATC 926 Query 25810 TTGACCTTGCTGGTTCTGCCACTTGCGCGTGCGCAACTTGCCTTCAATGTAAAGCTTTGA 25869 ||||| | ||| ||||||||| || || | | ||||||||| || |||| ||||| Sbjct 927 CTGACCATCCTGCCCCTGCCACTTACGTGTCTGGAGCTTGCCTTCGATATAAACTTTTGA 986 Query 25870 GCCTTTGCGTGTGTACTCGCCGGCCACCTCTGCCAACTTCCCGTATAACACAACACGGTG 25929 |||||| || || | || | ||| |||| ||| ||| | | |||||||| || Sbjct 987 GCCTTTACGAAGATATTGTTGCGCGATCTCAGCCAGCTTGCCGAACACAACAACACGATG 1046 Query 25930 CCACTCTGTTTTTTCTACCGGCTGCCCTGT 25959 ||||||||||||||| | ||||||| || Sbjct 1047 CCACTCTGTTTTTTCCTGCTGCTGCCCAGT 1076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123630251376984