Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq16943 107 3e-18 >seq16943 Length=7403 Score = 107 bits (118), Expect = 3e-18 Identities = 232/343 (68%), Gaps = 8/343 (2%) Strand=Plus/Plus Query 47970 ACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGA 48029 ||||||| || |||||||| ||||| ||||| ||||| || | || |||| Sbjct 907 ACCACGTAGAGGTGATTCATGGTTAAAGAGAATGCCACTGGTAGCGAAAATATCGTAGCT 966 Query 48030 TTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACG 48089 |||||| ||||| | || |||| | |||||||| ||| ||||||||| ||| Sbjct 967 TTCACGGTAGTTAATGGTCATACAGTGTGCGTAGAGTTTGGCACAACCATAAGGGCTACG 1026 Query 48090 TGGATAGAAAGGTGTGGTCTCTGTCTGTGG-AGTCTCTTGCACCTTACCATAAAGTTCAC 48148 || || || || || | ||| | |||||| ||| ||||| ||| ||||| | | |||| Sbjct 1027 AGGGTAAAATGGAGTCGCCTCAGACTGTGGGAGT-TCTTGAACCATACCAAACATTTCAG 1085 Query 48149 TGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAA 48208 ||| || |||||||| | ||| | |||| ||| || ||| | || ||||||| Sbjct 1086 AGGTCGAAGCTTGATAAAAACGTA----ATCTGGGATC--AACCAACCTGATGGCCTCAA 1139 Query 48209 GCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAACGAAA 48268 | | ||| | || | || || ||||| || | | ||| || ||||| | Sbjct 1140 GTAAATTCACAGCACCCAGTCCAGTAGTTTGACCGGTTAAAACCGGCTGATCGAACGACA 1199 Query 48269 CCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGG 48311 |||| ||| ||| || || |||||||||||| ||||| || Sbjct 1200 CCTTCACAAAACTTTGAGCTGCAAGATTATAAACTTCATCAGG 1242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665321346499960