Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq18866 131 1e-24 seq9016 120 2e-21 >seq18866 Length=138472 Score = 131 bits (144), Expect = 1e-24 Identities = 921/1463 (63%), Gaps = 38/1463 (3%) Strand=Plus/Minus Query 281430 TCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTC 281489 |||| || || |||||||||||||| | ||||||||||| || |||||||| || || | Sbjct 30943 TCACGTTCAGGATACCATTGGCATCAATGTCAAATGTGACCTCGATTTGAGGCACACCAC 30884 Query 281490 TCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGA 281549 | | || || || || || || | ||| | |||| | || || || || || | Sbjct 30883 GCGGTGCTGGGGGAATTCCGGTCAGCTCAAACTTGCCCAATTGGTTGTTGTCCTTGGTCA 30824 Query 281550 ATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTG 281609 || || |||||| | | ||||| || ||| || || || | ||| || | Sbjct 30823 TGGCGCGCTCTCCCTCGTAGACCTGGATCAACACACCAGGCTGGTTGTCAGCATAGGTGG 30764 Query 281610 TAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 281668 | || ||||| | | || || ||||| ||||| | | || | |||||| Sbjct 30763 TGAAGG-TCTGGGTCTGCTTGGTGGGGATTGTGGTGTTGCGCTTGATGAGGGAGGTCATC 30705 Query 281669 ATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 281728 | |||||||| || || | ||| || || || ||||||||||||| || | | || | Sbjct 30704 ACGCCACCAGCGGTCTCAATACCGAGCGACAGGGGAGTGACATCAAGCAGAAGCAGATCT 30645 Query 281729 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788 || | || ||| | | || || || || ||||| | |||||| ||||| ||| Sbjct 30644 TGCACATTCTCAGACTTGTCTCCGCTCAGGATGGCAGCTTGGACAGCAGCTCCATAGGCA 30585 Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAG 281847 ||||| |||||||| || | | || || || | || | ||||| || | ||| | | Sbjct 30584 ACAGCCTCATCAGGGTTGATTGATTTGTTCAGCTCCTTGTCGTTGAAGAAGTCTTGGAGG 30525 Query 281848 AAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA-CCT 281906 | || | | ||| || ||||| | ||||||||||| | ||||| ||||| | || Sbjct 30524 AGCTTCT-GGATCTTGGGGATACGGGTGGATCCTCCAACCAGGACAATGTCATGGATGCT 30466 Query 281907 GTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGACCAGCTCTA 281965 | || |||| | ||| | | || || || ||| | | | | | | Sbjct 30465 G-CCCTTGTCCATGCGGGCGTCCTTCAGGGCCTTCTCGACTGGGATGAGGGTC-TCACGG 30408 Query 281966 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAA 282023 || | || | ||||| || || || ||| | || || || | || || |||| Sbjct 30407 AAGAGATCAGCGCAAAGATCCTCAAAGCGAGCCTTGGT--GATGGAAGTGTAGAAGTCAA 30350 Query 282024 TTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTT 282083 || || || | ||| |||| ||| || | | || || || || | ||| | Sbjct 30349 CACCCTCAAAAAGAGAGTCAATTTCGATGGAGGCGGTGGTGGAGCTGGACAGAGTACGCT 30290 Query 282084 TAGCACGTTCACATGCTGTCCTTAGTC----TTCGTAAGGCT--TTTGCTGATTGATTCA 282137 | || | |||||| ||||| | || | || || ||| ||| | || ||| Sbjct 30289 TCGCTCTTTCACAAGCTGTGCGCAGACGGCGCACGGAACGCTTGTTTCCAGA--GAT--- 30235 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 ||| | || | || | |||||| || ||| | | || ||||| || |||| Sbjct 30234 -GTCTTTCTTGTGCTTGCGCTTGAATTCCCCAATGAAGTGGTTGACCAGACGGTTGTCAA 30176 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || || |||||||| | ||| | ||| || | | || | || | || || | Sbjct 30175 AGTCCTCTCCTCCCAAATGAGTGTCTCCACTGGTGGACTTCACCTCAAAGATGCCGTCCT 30116 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | || | | |||||| |||||| ||||||| |||||| || || || | Sbjct 30115 CAATGGTCAGGACTGAGACATCAAAGGTTCCGCCACCCAGATCAAAGATCAGGACGTGAC 30056 Query 282318 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377 || | || || |||||||| ||||||| || || || || || || || | Sbjct 30055 GCTCGCCTCCCACTTTCTTGTCAAGACCGTACGCAATGGCTGCGGCTGTGGGCTCGTTGA 29996 Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437 | || | || ||||| | || | || | || ||||| || ||||| || | || Sbjct 29995 TGATACGCAGGACATTCATTCCGGAGATGATACCGGCATCCTTGGTGGCCTGACGCTGGC 29936 Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 ||||| || || || || ||||| || || || ||||| | ||||| | | || Sbjct 29935 TGTCGTTGAAGTAGGCGGGGACAGTGATGACTGCGTCTGTGAGGGTCTTTCCGAGGT-AG 29877 Query 282498 CGCT-TGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--AGAA- 282553 | || || | ||||| || | | |||||| || | | |||||| |||| Sbjct 29876 CCCTCAGCCACCTCCTTCATCTTGAGCAGCACCATTGAGGAGACCTCTTCTGGGAAGAAG 29817 Query 282554 TATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT---ATTACCAACATTA 282610 ||| || |||| | || |||| | | || || ||| || || Sbjct 29816 CATTTCT---CCTCATCCTTGTAGTTGACTTTGATCTTGGGCTTGCCATTGTCA---TTG 29763 Query 282611 ATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTA 282670 ||||| | || ||||| ||||| || |||||| ||||||| |||| | | Sbjct 29762 ATAACCTGGAAGGGCCAGGTCTTCATGTCGTCTTGAACTGCGTGGTCATCAAAACGACGA 29703 Query 282671 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTG 282730 ||||| | || || || ||||| || || ||||| ||||| | ||| | |||| ||| Sbjct 29702 CCAATCAGACGCTTGGCGTCAAAGATGGTGTTGGTGGGATTCATGGCAACCTGATTCTTG 29643 Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 282790 || | |||||| |||||| |||||| || || || | || ||||| ||||| ||||| Sbjct 29642 GCGGAATCTCCGATCAGACGTTCTGAATCGGTGAAAGCCACGTATGAGGGAGTGGTGCGG 29583 Query 282791 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTA 282850 || || |||||||| || || || || || || |||| | | ||||| || || Sbjct 29582 TTTCCCTGATCATTGGCGATGATCTCCACCTTGCCATGCTCAAACACACCCACGCAGGAG 29523 Query 282851 AAAGTTGTTCCTAAATCAATACC 282873 | || ||||| || ||||| || Sbjct 29522 TAGGTGGTTCCCAAGTCAATGCC 29500 Score = 114 bits (126), Expect = 1e-19 Identities = 313/474 (66%), Gaps = 4/474 (1%) Strand=Plus/Minus Query 281430 TCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTC 281489 |||| || || |||||||||||||| | ||||||||||| || |||||||| || || | Sbjct 72183 TCACGTTCAGGATACCATTGGCATCAATGTCAAATGTGACCTCGATTTGAGGCACACCAC 72124 Query 281490 TCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGA 281549 | | || || || || || || | ||| | |||| | || || || || || | Sbjct 72123 GCGGTGCTGGGGGAATTCCGGTCAGCTCAAACTTGCCCAATTGGTTGTTGTCCTTGGTCA 72064 Query 281550 ATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTG 281609 || || |||||| | | ||||| || ||| || || || | ||| || | Sbjct 72063 TGGCGCGCTCTCCCTCGTAGACCTGGATCAACACACCAGGCTGGTTGTCAGCATAGGTGG 72004 Query 281610 TAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 281668 | || ||||| | | || || ||||| ||||| | | || | |||||| Sbjct 72003 TGAAGG-TCTGGGTCTGCTTGGTGGGGATTGTGGTGTTGCGCTTGATGAGGGAGGTCATC 71945 Query 281669 ATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 281728 | |||||||| || || | ||| || || || ||||||||||||| || | | || | Sbjct 71944 ACGCCACCAGCGGTCTCAATACCGAGCGACAGGGGAGTGACATCAAGCAGAAGCAGATCT 71885 Query 281729 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788 || | || ||| | | || || || || ||||| | |||||| ||||| ||| Sbjct 71884 TGCACATTCTCAGACTTGTCTCCGCTCAGGATGGCAGCTTGGACAGCAGCTCCATAGGCA 71825 Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAG 281847 ||||| |||||||| || | | || || || | || | ||||| || | ||| | | Sbjct 71824 ACAGCCTCATCAGGGTTGATTGATTTGTTCAGCTCCTTGTCGTTGAAGAAGTCTTGGAGG 71765 Query 281848 AAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 | || | | ||| || ||||| | ||||||||||| | ||||| ||||| Sbjct 71764 AGCTTCT-GGATCTTGGGGATACGGGTGGATCCTCCAACCAGGACAATGTCATG 71712 >seq9016 Length=252749 Score = 120 bits (132), Expect = 2e-21 Identities = 261/382 (68%), Gaps = 8/382 (2%) Strand=Plus/Minus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||| | ||| || ||||| |||||||| || | || || |||| | ||||| ||||| Sbjct 235648 GGCTGCCACGTTCAGAATGCCATTGGCGTCGATGTCGAAGCTGACATTGATTTGGGGGAC 235589 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 |||| | | ||| | |||| || | || | ||| ||||| || || ||| | Sbjct 235588 ACCTCGCGGGGCACGACGGATGCCATGCAGCTCAAAGCGACCCAGGAGGTTGTTGTCTCT 235529 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 ||| | || ||| |||||| ||| |||||| ||||| ||| || || || | || Sbjct 235528 AGTCATGGCTCTTTCGCCCTCGTAAACTTGGATGGTAACCCCAGGCTGGTTGTCGGCGTA 235469 Query 281605 AGTTGTAAATAC-TCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663 || | || | |||| |||| || || ||||| || || | | || | ||||| Sbjct 235468 TGTGCTGAAGGCCTCTG-ATTTGGTAGTCGGGATTGTGGTATTGCGAGAGATCAGATTGG 235410 Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723 |||||| |||||| |||||||| | || || || || |||||||| || | || || | Sbjct 235409 TCATAACACCACCGGCTGTTTCGATGCCGAGGGAGAGTGGAGTGACGTCGATGAGCACGA 235350 Query 281724 TATT-TTGA-AGTTTTTCATCAGTTTGA-CCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 || |||| || ||| || ||||| ||| || || ||||| || | ||| |||| Sbjct 235349 GGTTCTTGACAGCTTT--GTC-TTTTGAGCCAGTGAGCATTGCTGCCTGCACAGCTGCAC 235293 Query 281781 CATATGCAACAGCTTCATCAGG 281802 | || || ||||| |||||||| Sbjct 235292 CGTACGCCACAGCCTCATCAGG 235271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739609060613478