Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq18637 93.3 1e-14 seq1283 91.5 4e-14 >seq18637 Length=6726 Score = 93.3 bits (102), Expect = 1e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 38344 GAGAAAACAGAGTGGCACCGAGTTACTTTGTTTGGGAAGCTGGCTGAAGTTGCTGGCGAA 38403 || |||||||||||||| || ||| | |||| || ||||||||||| | || || Sbjct 1061 GAAAAAACAGAGTGGCATCGTGTTGTTGTGTTCGGCAAGCTGGCTGAGATCGCGCAACAA 1002 Query 38404 TACCTTCGAAAAGGATCTCATGTTTATATTGAAGGCCAGCTTGAAACTAAGAAGTGGCGG 38463 || ||||| ||||| || | |||||||| |||||| |||| | || ||||||| | Sbjct 1001 TATCTTCGTAAAGGCTCAAAAGTTTATATCGAAGGCAAGCTCCAGACACGTAAGTGGCAG 942 Query 38464 GATCAAAGCGGTCAGGACCGATACACAATAGGCATTGTGGTTCAGGGTTACAATGG 38519 | || |||||||| |||||||| | | ||||| || | |||| || ||| Sbjct 941 GGGCAGGATGGTCAGGATCGATACACGACTGAAATTGTTGTCGATGGTTTCAGTGG 886 >seq1283 Length=34873 Score = 91.5 bits (100), Expect = 4e-14 Identities = 209/309 (68%), Gaps = 7/309 (2%) Strand=Plus/Plus Query 38183 AAGG-TTAAGTAATGGCAAGCAGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGT 38241 |||| ||||| |||| || ||||| | ||||| || || |||| || |||| || Sbjct 30648 AAGGATTAAG-AATG---AGTAGAGGCATCAACAAAGTAATTCTAATCGGCAACCTGGGC 30703 Query 38242 CAAGATCCAGAGGTGCGCTAT-CTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGC 38300 | ||||| || || || | | | || || | || ||||| || || || | || Sbjct 30704 GACGATCCGGATGTTCGGTTTACGGGTCAG-GGTGCAGCCGTGGCCAATCTCTCACTGGC 30762 Query 38301 AACGTCTGAGGTTTGGCGGGATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCA 38360 || ||||| ||| ||||||| | ||||| |||| | || || || || ||||| Sbjct 30763 CACCAGTGAGGCATGGAAGGATAAGAACACCGGCCAGCAGCAGGAAAAGACCGAATGGCA 30822 Query 38361 CCGAGTTACTTTGTTTGGGAAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATC 38420 || || | || ||||||||||| || |||| | ||||| ||||| || Sbjct 30823 TCGGGTGGTGATCTTCGGGAAGCTGGCGGAGATTGCCCAGCAGTACCTCAATAAAGGCTC 30882 Query 38421 TCATGTTTATATTGAAGGCCAGCTTGAAACTAAGAAGTGGCGGGATCAAAGCGGTCAGGA 38480 | |||||||| |||||| |||| | || ||||||| |||| || ||||||||| Sbjct 30883 CAAGGTTTATATCGAAGGCAAGCTCCAGACCCGAAAGTGGCAGGATAAAGACGGTCAGGA 30942 Query 38481 CCGATACAC 38489 ||||||||| Sbjct 30943 CCGATACAC 30951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132866369163066