Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq1283 122 2e-23 seq11123 105 2e-18 >seq1283 Length=34873 Score = 122 bits (134), Expect = 2e-23 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 230 ACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGC 289 ||||||| ||||| ||||| || || || | | ||||||||||| || || || Sbjct 30966 ACCACGACCTCAGTGGTGTATCGGTCCTGACCGTCTTTATCCTGCCACTTTCGGGTCTGG 30907 Query 290 AGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCC 349 ||| |||||| || | |||||| |||||| |||||||| ||| || || ||| Sbjct 30906 AGCTTGCCTTCGATATAAACCTTGGAGCCTTTATTGAGGTACTGCTGGGCAATCTCCGCC 30847 Query 350 AGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGC 409 ||||| |||||||| ||||| || |||||||| || ||||| | || || || || | | Sbjct 30846 AGCTTCCCGAAGATCACCACCCGATGCCATTCGGTCTTTTCCTGCTGCTGGCCGGTGTTC 30787 Query 410 TTATCCTTCCAGGTTTCAGACGTGGCAATTGATAACTGCGCCACG 454 ||||||||||| | ||| ||||| | ||| | | |||||| Sbjct 30786 TTATCCTTCCATGCCTCACTGGTGGCCAGTGAGAGATTGGCCACG 30742 >seq11123 Length=1243 Score = 105 bits (116), Expect = 2e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 230 ACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGC 289 ||||||| ||| || ||||| || || ||| | ||||||||||||||| || || Sbjct 402 ACCACGACTTCCGTGGTGTATCGGTCCTGGCCGTGATTGTCCTGCCACTTGCGGGTCTGG 461 Query 290 AGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCC 349 || |||||| ||| | | |||||||| ||||||| ||| ||| || |||||| Sbjct 462 AGTTTGCCTTCGATGTAGAGTTTGCTGCCCTTGCGCACCAGCTGCTGGGCAATGTCTGCC 521 Query 350 AGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTC 390 ||||| |||||| |||| | ||||||||| || ||| |||| Sbjct 522 AGCTTGCCGAAGGTGACGATGCGGTGCCACTCGGTTCTTTC 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135368150981118