Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2620 136 5e-27 >seq2620 Length=811290 Score = 136 bits (150), Expect = 5e-27 Identities = 166/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || || |||||| || ||||| |||||||| | |||||||| | Sbjct 743877 CCTCATCTCTGCTGATCAACTCGTTACTGAACGTGAGACCAGGCATCACGCCACGCTTCT 743936 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || ||||| |||||||| ||||| || || || || || || || ||||||| Sbjct 743937 TCAACCAGAAGATGGCTGCAAAAGACCCAGAGAAAAAAATACCCTCCACAGCAGCAAATG 743996 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCA---TTATGTATCCACTTCTGTGCCCAATCAG 39815 | || | | ||| ||||||| | | | | || ||||| | ||||||||||| Sbjct 743997 CGACCACACGCTCAGCGTAACTGCTCTGAGAATCATTGATCCAACGCAATGCCCAATCAG 744056 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 |||||| ||| ||||| ||||| || || || || || || | ||| Sbjct 744057 CTTTCTCCTTAACACAGGGCATCGTCTCGATGGCGTTGAACAAATA 744102 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 40003 ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATA 40062 ||||||||| || |||||||| || || || ||||| |||| ||||| ||| || | Sbjct 744367 ATTTTCATTAACAATTCCATCGCTGGCAGCGAAAAAAGCCAGAACATGAGAAATGAAGTG 744426 Query 40063 TTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTC 40122 || || ||| ||| | | ||||| | | |||||||| | || || || || Sbjct 744427 ACGCTCGTCTGGTTTCAGCTGCTCCCAGTGAGAAACGTCTTTTGAGAGGTCGACCTCCTC 744486 Query 40123 AGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTAT 40182 || ||||| || ||||| || || ||||||||||| | ||| || ||| | |||||||| Sbjct 744487 TGCCGTCCAGAAAGACGCTTCAGCTTTTTTGTACATTTGCCAGATGTCATGGTATTGTAT 744546 Query 40183 TGGAAAAATAACAAATC 40199 ||| ||||| || |||| Sbjct 744547 TGGGAAAATGACGAATC 744563 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 39320 CCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 39379 ||||| || |||||||||||||| | ||||| || || || |||||||| |||||||| Sbjct 743443 CCCATCTTCTGGTATTCACCAACCCTCTTCTCAAAGAAGTTTGTTTTGCCCTCCAATGAG 743502 Query 39380 ATATTTTCCATGAAATCAAACGGATT 39405 || || |||||||| ||||||||||| Sbjct 743503 ATGTTGTCCATGAAGTCAAACGGATT 743528 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 |||||||| |||| ||| || ||||||||||| ||||| || |||||||| ||||| ||| Sbjct 744191 TATGTATCAATTAGCAGGCTGTACATTTCTGAGTGGATATTCTCAATCGCAATCTGGAAT 744250 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 || || || ||||| ||||| || | ||| || ||| Sbjct 744251 CCATAGAAGCATCTCGCTTCTGTGACTTGAACTTCT 744286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686730177952920