Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq18747 102 7e-17 seq9036 98.7 8e-16 seq13439 96.9 3e-15 seq3888 95.1 1e-14 seq20156 87.8 2e-12 >seq18747 Length=106157 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| |||| ||||| || | || || ||||| || || |||||||||| Sbjct 22975 TGCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGC 22916 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | |||| | ||||| || || || || || | || | | || ||||| || | Sbjct 22915 TCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGGG 22856 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| ||||| | || | ||||||| || |||| Sbjct 22855 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCTGAGGGCTCAA 22796 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || || || |||||||| ||||| Sbjct 22795 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 22747 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| |||| ||||| || | || || || || || || |||||||||| Sbjct 23203 TGCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 23144 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | |||| | ||||| || || || || || | || | | ||| ||||| || | Sbjct 23143 TCAGGGTGCGGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 23084 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| ||||| | || | ||||| | || |||| Sbjct 23083 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCCGAGGGCTCAA 23024 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || || || |||||||| ||||| Sbjct 23023 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 22975 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || |||| ||||| || | || || || || || || |||||||||| Sbjct 22519 TGCCTCCTCTCAGACGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 22460 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | |||| | ||||| || || || ||||| | || | | ||| ||||| || | Sbjct 22459 TCAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGATCTGGGG 22400 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| |||| | || | ||||||| || || | Sbjct 22399 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCA 22340 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || || ||||| ||||| ||||| Sbjct 22339 CCTCAAGGGTGATTGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 22291 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || |||| ||||| || | || || || || || || |||||||||| Sbjct 23431 TGCCTCCTCTCAGACGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 23372 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | |||| | ||||| || || || || || | || | | ||| ||||| || | Sbjct 23371 TCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 23312 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| || | | || | ||||||| || |||| Sbjct 23311 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCTGAGGGCTCAA 23252 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || || || |||||||| ||||| Sbjct 23251 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 23203 >seq9036 Length=11236 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| |||| ||||| || | || || || || || || |||||||||| Sbjct 10525 TGCCTCCTCTCAAACGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 10584 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | |||| | ||||| || || || || || | || | | ||| ||||| || | Sbjct 10585 TCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 10644 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| ||||| | || | ||||| | || |||| Sbjct 10645 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCGGAGGGCTCAA 10704 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || || || |||||||| ||||| Sbjct 10705 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 10753 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| |||| ||||| || | || || || || || || |||||||||| Sbjct 10753 TGCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 10812 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | |||| | ||||| || || || || || | || | | ||| ||||| || | Sbjct 10813 TCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 10872 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| ||||| | || | ||||| | || |||| Sbjct 10873 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCGGAGGGCTCAA 10932 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || || || |||||||| ||||| Sbjct 10933 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 10981 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| |||| ||||| || | || || || || || || |||||||||| Sbjct 10981 TGCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 11040 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | |||| | ||||| || || || || || | || | | ||| ||||| || | Sbjct 11041 TCAGGGTGCGACCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 11100 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| ||||| | || | ||||| | || |||| Sbjct 11101 GAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCGGAGGGCTCAA 11160 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || || || |||||||| ||||| Sbjct 11161 CCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 11209 >seq13439 Length=213493 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || |||| ||||| || | || || || || ||||| |||||||| | Sbjct 37617 TGCCTCCTCTCAGACGCAGCACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAC 37558 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | |||| | || || ||||| || || || | || | | ||| ||||| || | Sbjct 37557 TCAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGG 37498 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||||| || || ||||||| || | |||| | || || | ||||| || Sbjct 37497 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATCGTATCAGATGGCTCCA 37438 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || || | ||||||||||| || ||||||||||| ||||| Sbjct 37437 CCT-CAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 37389 >seq3888 Length=367485 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | || ||||| ||||| || | || || || || || || |||||||||| Sbjct 211491 TGCCACCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 211432 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | |||| | ||||| || || || || || | || | | ||| ||||| || | Sbjct 211431 TCAGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGG 211372 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| |||| | || | ||||||| || || | Sbjct 211371 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCA 211312 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258 | || || || || | ||||| || || || ||||||||||| ||||| | |||| || Sbjct 211311 CCTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT-GATGCTGTAA 211253 Query 27259 AT 27260 || Sbjct 211252 AT 211251 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| ||||| || | || || || || || || ||||||||||||| | |||| | Sbjct 211933 CGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCA 211874 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| || || || || || | || | | ||| ||||| || || | || || || Sbjct 211873 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCTTCCTTG 211814 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| | |||| ||||||| || || || || || || || Sbjct 211813 TCCTGGATCTTGGCCTTCACATTCTCTATGGTGTCTGAGGGCTCCACCTCAAGGGTGATG 211754 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || || ||||||||||| ||||| Sbjct 211753 GTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 211719 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | || ||||| ||||| || | || || || || || || |||||||||| Sbjct 211719 TGCCACCTCTCAGACGCAACACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 211660 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | |||| | ||||| || || || || || | || | | ||| ||||| || | Sbjct 211659 TCAGGGTGCGACCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGG 211600 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| |||| | || | ||||||| || || | Sbjct 211599 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCA 211540 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || || ||||||||||| ||||| Sbjct 211539 CCTCAAGGGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATCTGCAT 211491 >seq20156 Length=513389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 131614 GGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCAC 131673 ||||||||| |||||||| | |||||||| |||||||||||||| |||| ||| || | Sbjct 226743 GGGACACATGAGCGACCAATCTCCGTTCTGCTCAACTCGCTTCATGAACAGATCAGGAAT 226684 Query 131674 CCATAACGCGTACAACAGATCTCTAGCT 131701 ||| | ||||| |||||||| || ||| Sbjct 226683 CCAAAGGGCGTAGAACAGATCCCTCGCT 226656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424826663592936