Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq17248 116 4e-21 seq16943 109 6e-19 >seq17248 Length=181245 Score = 116 bits (128), Expect = 4e-21 Identities = 181/259 (70%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||||| || | ||| ||||| || || || || ||||| ||||||||| Sbjct 103922 GTGAAGATGTATCTGGGGGAGGCGGCATCTTTCCCTCCATGGAGACGCGTGCCAAACTGT 103863 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| | |||||||| ||| ||| ||| || | |||||||| | | | | Sbjct 103862 CCGTTGGGCTGCAAGAGGTTGATGTTATTGCTGCCGACATAGTTCTGAGCAAGAGTGATG 103803 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || |||| | ||| | ||| ||||||||||||| || | ||| || | | ||| Sbjct 103802 ATGGTGCTCATCAGGGACTGTTCTCCGTGGTGATACGACGACAACTCAGCCACTGAACCC 103743 Query 152209 GCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACC 152268 || || |||||||| || || ||| | ||| ||| ||||| |||| | | || || Sbjct 103742 GCGAATTGCGCCACTTTGATTTCCTTAACCAGATTCCGCTTGAAGCAGGTGAACATAACT 103683 Query 152269 TTGCGCTGGGATGGTTTCA 152287 || ||||| ||| |||| Sbjct 103682 TTACGCTGTCCTGGCTTCA 103664 >seq16943 Length=7403 Score = 109 bits (120), Expect = 6e-19 Identities = 227/335 (68%), Gaps = 5/335 (1%) Strand=Plus/Plus Query 159014 GCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCC 159073 |||||||| | || || || || | |||| |||||||| || ||||| || | || | Sbjct 771 GCCACATGCCTTCTACATAGTCTTTGGCGTAGCCCCAGTCACGTTTGGCTTCGAGATTTC 830 Query 159074 CGAGCTC--GATGACTTTTCCAGACTT--TTTCCACTCAGCCAGACCGAGCGTGATCTTG 159129 ||||||| ||||| | | | | | ||| ||| | ||||||| ||||| || Sbjct 831 CGAGCTCTAGATGAGACTGCTTGCCCTGCTTTACACGAA-CCAGACCATCGGTGATTTTT 889 Query 159130 CGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAA 159189 || ||||| ||||| || || | || ||||||||||| |||||||| | | Sbjct 890 CGGGTCACGAACTCAAGACCACGTAGAGGTGATTCATGGTTAAAGAGAATGCCACTGGTA 949 Query 159190 GCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGAG 159249 ||||| | | ||| || ||||| || | || || |||| | | |||| |||| Sbjct 950 GCGAAAATATCGTAGCTTTCACGGTAGTTAATGGTCATACAGTGTGCGTAGAGTTTGGCA 1009 Query 159250 ACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTGAATTGGTTCCTGAACC 159309 || || || || ||||| |||||||| ||| ||||| || |||| |||||| Sbjct 1010 CAACCATAAGGGCTACGAGGGTAAAATGGAGTCGCCTCAGACTGTGGGAGTTCTTGAACC 1069 Query 159310 TTTCCAAACATTTCACTCGTCCCAGCCTGATAAAA 159344 | |||||||||||| ||| ||| |||||||| Sbjct 1070 ATACCAAACATTTCAGAGGTCGAAGCTTGATAAAA 1104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547073703319400