Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq3827 187 2e-42 >seq3827 Length=419775 Score = 187 bits (206), Expect = 2e-42 Identities = 244/335 (73%), Gaps = 2/335 (1%) Strand=Plus/Minus Query 30114 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30173 |||| || ||||| || |||| |||||| | | |||||| || |||||| |||| || Sbjct 185460 CTTTCGGATTCCAAGCACACAAGATGATTCTGCGGTCTTCCGGATTGTTCTTGATCTTGT 185401 Query 30174 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGT 30233 | | | ||| ||||||||| | ||| || | |||||| || |||||| ||| Sbjct 185400 CAATGACGTCAGCCAGCTGATCAATGCCCTGGCCAGTGTAGTCAGCGTGCATGTCTTTGT 185341 Query 30234 ACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC 30293 |||| || || || || | ||| ||||| || || ||||| || |||||||||||||||| Sbjct 185340 ACTCCGCACCAAAGTGGCGCCATTGGAAGCCATAGACCGGACCGAGGTCTCCCTCTTCCC 185281 Query 30294 TGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 30353 | ||||||| | ||||||||| | || | | || ||| | |||||||| | | Sbjct 185280 GTTCAGTGAAGCCCATTTTGTCCAAATATTCACGGCTTCCATTGCCATCCCAGATGTGGA 185221 Query 30354 CCCCCTTCTCAGAGA-GCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30412 | |||||||| |||| |||| || | ||| || |||||| ||| ||||||||| |||||| Sbjct 185220 CGCCCTTCTCCGAGAGGCTC-TTAGCGTTGGTTGACCCTTTGATGAACCACAGAAGCTCC 185162 Query 30413 TCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGT 30447 || | || || ||| ||||| | |||||| || Sbjct 185161 TCAGCCACTCCCCGCCAGAAGACGCGCTTGGTAGT 185127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406207385457876