Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq16867 102 2e-17 seq14711 102 2e-17 >seq16867 Length=7440 Score = 102 bits (112), Expect = 2e-17 Identities = 252/378 (67%), Gaps = 12/378 (3%) Strand=Plus/Plus Query 19862 CTGAAATCCCGCCAGATTGGCGCGACGTTTTATTTTTCCCGCGAGGCGCTGCTGCGCGCC 19921 ||||||||||||||||| || || ||||| || |||||| || || ||| Sbjct 1204 CTGAAATCCCGCCAGATCGGGTTCACCCGCTATTTCTCGGCGGAGGCGTTGGTGGATGCC 1263 Query 19922 CTGAAAACCGGTCATAACCAGATTTTTCTGTCGGCCAGTAAAACGCAGGCGTATGTGTTC 19981 ||| | ||||| | |||||||||||| | || ||| | | | |||||| | |||||| Sbjct 1264 CTGCAGACCGGAGAGAACCAGATTTTTATCTCCGCCTCCAGAGCCCAGGCGGAGGTGTTC 1323 Query 19982 CGCGAATACATCATCGCCTTTGCCC--GGCTGGTT-GACGTTGACCTGACCGGT---GAC 20035 || || || |||| | ||||| | ||||| || || |||| ||| ||| Sbjct 1324 CGGGATTATATCAAAGGGTTTGCTTTAGATTGGTTTGATAAAGAGCTGAAAGGTAAAGAC 1383 Query 20036 CCGATTGTCCTGGGCA---ATAACGGC---GCAAAACTGATTTTTCTCGGCACCAACTCC 20089 |||| ||| | ||||||| || || ||||||| ||||||| ||| Sbjct 1384 AAAATTGAGCTGATGACCGATAACGGGCTGGCCTGCCTCTATTTTCTCAGCACCAATTCC 1443 Query 20090 AACACCGCACAGAGCCATAACGGCGACCTGTACGTCGACGAGATTTTCTGGATCCCGAAT 20149 | ||||| |||||| | ||||| | | || | || ||| |||||||| || | || Sbjct 1444 ATGACCGCTCAGAGCTACAACGGAAATTTCTATTTTGATGAGTATTTCTGGACCCGGGAT 1503 Query 20150 TTTCAGGTACTGCGTAAGGTGGCATCAGGTATGGCCTCACAGAGTCACCTGCGCTCGACC 20209 ||| | |||| |||||||| ||| |||||| |||| | | || ||| Sbjct 1504 TTTGAAAAACTGAACAAGGTGGCCGCAGCCATGGCCAGCCAGAAACGGTTCCGGAAAACC 1563 Query 20210 TATTTCTCCACCCCGTCC 20227 |||||||||||||||||| Sbjct 1564 TATTTCTCCACCCCGTCC 1581 >seq14711 Length=7958 Score = 102 bits (112), Expect = 2e-17 Identities = 252/378 (67%), Gaps = 12/378 (3%) Strand=Plus/Minus Query 19862 CTGAAATCCCGCCAGATTGGCGCGACGTTTTATTTTTCCCGCGAGGCGCTGCTGCGCGCC 19921 ||||||||||||||||| || || ||||| || |||||| || || ||| Sbjct 1134 CTGAAATCCCGCCAGATCGGGTTCACCCGCTATTTCTCGGCGGAGGCGTTGGTGGATGCC 1075 Query 19922 CTGAAAACCGGTCATAACCAGATTTTTCTGTCGGCCAGTAAAACGCAGGCGTATGTGTTC 19981 ||| | ||||| | |||||||||||| | || ||| | | | |||||| | |||||| Sbjct 1074 CTGCAGACCGGAGAGAACCAGATTTTTATCTCCGCCTCCAGAGCCCAGGCGGAGGTGTTC 1015 Query 19982 CGCGAATACATCATCGCCTTTGCCC--GGCTGGTT-GACGTTGACCTGACCGGT---GAC 20035 || || || |||| | ||||| | ||||| || || |||| ||| ||| Sbjct 1014 CGGGATTATATCAAAGGGTTTGCTTTAGATTGGTTTGATAAAGAGCTGAAAGGTAAAGAC 955 Query 20036 CCGATTGTCCTGGGCA---ATAACGGC---GCAAAACTGATTTTTCTCGGCACCAACTCC 20089 |||| ||| | ||||||| || || ||||||| ||||||| ||| Sbjct 954 AAAATTGAGCTGATGACCGATAACGGGCTGGCCTGCCTCTATTTTCTCAGCACCAATTCC 895 Query 20090 AACACCGCACAGAGCCATAACGGCGACCTGTACGTCGACGAGATTTTCTGGATCCCGAAT 20149 | ||||| |||||| | ||||| | | || | || ||| |||||||| || | || Sbjct 894 ATGACCGCTCAGAGCTACAACGGAAATTTCTATTTTGATGAGTATTTCTGGACCCGGGAT 835 Query 20150 TTTCAGGTACTGCGTAAGGTGGCATCAGGTATGGCCTCACAGAGTCACCTGCGCTCGACC 20209 ||| | |||| |||||||| ||| |||||| |||| | | || ||| Sbjct 834 TTTGAAAAACTGAACAAGGTGGCCGCAGCCATGGCCAGCCAGAAACGGTTCCGGAAAACC 775 Query 20210 TATTTCTCCACCCCGTCC 20227 |||||||||||||||||| Sbjct 774 TATTTCTCCACCCCGTCC 757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104412599994582