Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq14142 235 2e-57 >seq14142 Length=1100 Score = 235 bits (260), Expect = 2e-57 Identities = 490/716 (68%), Gaps = 24/716 (3%) Strand=Plus/Minus Query 40783 GGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATG-GTGATTATAATACATTAA 40841 || ||||| || || |||||||||||||| || |||| | ||| || || | || || Sbjct 1041 GGCGTTCTTCCGCAACACATTTTTCCTTGGTGCGTTCTCTTTGTG-TTGTAGTG-ATGAA 984 Query 40842 -CCACTCATCTAAATCCGCTTGTAATG--TCGTTAAATCCGTATAAATTTTCTTCCTAAA 40898 ||| ||||| | ||| ||||||||| ||| | | ||||||| |||||| | || Sbjct 983 GCCATTCATCGAGATCGGCTTGTAATTGTTCGATGGTTTCGTATAA--TTTCTTTCGGAA 926 Query 40899 TGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTCGT 40958 || | || |||||||| || |||||||| ||||| || || ||||| || ||||| || Sbjct 925 TGTGATCTGATAAAATTCCTGCAAGATTGTCTTATGAAAACGCTCGCATATGCCATTTGT 866 Query 40959 CTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTA--AATAAAGC 41016 || || || || || || ||||| || || || || || || || || | ||||| Sbjct 865 TTGCGGGTGTTTGACCTTGGTTTTGGTGTGATCAATATCGTTAATGGCAAGGAATAAT-- 808 Query 41017 TCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCC----TCGGTCAGTTAATAT 41072 | ||| || || || ||| |||||| |||||||| |||| |||||||| |||| Sbjct 807 TGATAGTCATGTTTGTCTTTCTTGCCGCAATATTCTGTTCCCCTATCGGTCAG--AATAC 750 Query 41073 GCGTAACATCGGTAAACCTTGGCTT--TCAAAGTATGGTAACACTTTATCATTCAGCATA 41130 || | || || | || | || ||| | | || ||||| | ||| || |||| | Sbjct 749 GC--AGCACTGGCAG--CTCGTTTTCCTCATAAAAAGGCAACACCTGATCGTTGAGCAAA 694 Query 41131 TCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAA 41190 || || || | || | ||||| | || ||||| || ||| || || || | ||| Sbjct 693 TCGGCTGCTGTAATGGGCGTCTTGGTGGTGTAAAGCTTGGCATGAGCAACCTTGCAATAA 634 Query 41191 GTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAA 41250 || || ||| | ||||| ||||||| || || || |||||||| | || ||||| ||| Sbjct 633 GTGTCGATATAGGTTTGCTGATAAACGCGCCCGACGCCTTTGAGCGTTCCAACATAAAAA 574 Query 41251 GTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATCTCA 41310 || || || ||||| | |||||||||||| | || ||||| || || || || ||| Sbjct 573 GTGTCCTGCGAGCCCAAATAGCCAGGGTGCGCGGTATCAATCTCGCCGCAAGCCTCGTCA 514 Query 41311 TCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCT 41370 || | || || ||| | || || ||||| | ||| | || ||| ||| | | Sbjct 513 TCATGCTTTTTCTTCTCAAGAGCCTGAACCTGCGCTTCGGTCAGAATACCACCATCATTC 454 Query 41371 GCAACCAGTTTTTCCAGGGCGATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAAC 41430 |||||| |||||| || | | | || || || ||||| || | |||||| | | Sbjct 453 GCAACCTTGGCTTCCAGTGCTTTGAGCCGTTTTTTGAAGTTGGCTAGGTCATGACGCAGC 394 Query 41431 CAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGAGTTCGTT 41486 |||||||| || ||||| | || ||||| | ||| ||||| |||||||| Sbjct 393 CAAATCGAGCGCACACCCGAGGGCGAGACAAATACCCCTGCCTTACGCAGTTCGTT 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166682013430086