Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2620 109 8e-19 seq20156 96.9 5e-15 >seq2620 Length=811290 Score = 109 bits (120), Expect = 8e-19 Identities = 158/221 (71%), Gaps = 9/221 (4%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || || |||||| || |||||||| ||||| | ||||| || || Sbjct 743879 TCATCTCTGCTGATCAACTCGTTACTGAACGTGAGACCAGGCATCACGCCACGCTTCTTC 743938 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | ||| || || || || ||||| ||||| || || || || || || || ||||||||| Sbjct 743939 AACCAGAAGATGGCTGCAAAAGACCCAGAGAAAAAAATACCCTCCACAGCAGCAAATGCG 743998 Query 48285 GTAAGTCTCTCTCCGTAACTGG-CT-----TCGTTGTGTATCCACCGTTGTGCCCAATCA 48338 | | ||| |||||||| || || ||| ||||| || |||||||||| Sbjct 743999 ACCACACGCTCAGCGTAACTGCTCTGAGAATCATTG---ATCCAACGCAATGCCCAATCA 744055 Query 48339 GCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 || |||| ||| ||||| ||||| || || || || || || Sbjct 744056 GCTTTCTCCTTAACACAGGGCATCGTCTCGATGGCGTTGAA 744096 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 48527 ATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATA 48586 ||| ||||| || |||||||| || ||||| ||||| || | ||||| ||| || | Sbjct 744367 ATTTTCATTAACAATTCCATCGCTGGCAGCGAAAAAAGCCAGAACATGAGAAATGAAGTG 744426 Query 48587 TTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTC 48646 |||| | |||| | | ||||| | | |||||||| | || || || || Sbjct 744427 ACGCTCGTCTGGTTTCAGCTGCTCCCAGTGAGAAACGTCTTTTGAGAGGTCGACCTCCTC 744486 Query 48647 AGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGAT 48706 || ||||| || || || || |||||||| ||||| | ||| || ||| |||||| || Sbjct 744487 TGCCGTCCAGAAAGACGCTTCAGCTTTTTTGTACATTTGCCAGATGTCATGGTATTGTAT 744546 Query 48707 TGGGAAAATAACAAATC 48723 ||||||||| || |||| Sbjct 744547 TGGGAAAATGACGAATC 744563 Score = 89.7 bits (98), Expect = 7e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 || || | ||| ||||| |||| || || |||||||| ||||| ||||| ||||| || Sbjct 744182 TCCTTGATGTATGTATCAATTAGCAGGCTGTACATTTCTGAGTGGATATTCTCAATCGCA 744241 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 ||||| ||||| || || |||||||||||||||| Sbjct 744242 ATCTGGAATCCATAGAAGCATCTCGCTTCTGTGA 744275 >seq20156 Length=513389 Score = 96.9 bits (106), Expect = 5e-15 Identities = 159/227 (70%), Gaps = 13/227 (6%) Strand=Plus/Minus Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 || || ||||| ||||| | ||| | || ||||| || || |||| ||||||||| | Sbjct 226506 TTGTTTCCTCCTTGATCAACATAGCGAGCAGTGTTGTTGTAGACTCGCAACATTGGCAGC 226447 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 | |||||| || || || || || || ||||| |||| ||| | |||||||| | Sbjct 226446 AAACCGTTTGAAGTGCCGTTGGTCCCGGAAATGAAACTACCAGTGGCGCGAATGC----A 226391 Query 78273 ATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGT 78328 ||||| | ||| || || || || |||| || || || || || | ||||| || Sbjct 226390 ATGGACGTTGAGCCCGATGCCCCCAGCACTCTTGGAAATGAGCGCACACTGCTTCAAGGT 226331 Query 78329 ATCGTAGATACCCTCTATACT---GTCATCCATCATGTTAAGAAGAA 78372 |||||||||||||| || || | || |||| ||| || ||||| Sbjct 226330 GTCGTAGATACCCTCAATGCTATCGCCAGCCAT--TGTCAACAAGAA 226286 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 77060 ATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATT 77119 |||||| || ||||| ||||||| | | || || | | | | || | || | || Sbjct 227956 ATTCTTCATGTCATCGTTCCACAGTCCATTTTCAGTCAGATCCTTCAGTAAGTGGTGGTT 227897 Query 77120 AACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTC 77179 || | || ||||||||||| | |||| |||||||| || || || || |||||||| Sbjct 227896 GACGACCTGGAATTCTCCAGAGAGAACTCGTCGAGTGTAGATGTTGCTAGTGTATGGTTC 227837 Query 77180 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAA 77239 || ||||||||||| | ||| ||||| || || || |||||||| || |||| | Sbjct 227836 AGTTGACTCATTGTTTCCGAGAATCTGAGCGGTTGAGGCGGTTGGCATTGGAGCCATGAG 227777 Query 77240 TAAACTATTTCTGAGACCATGT 77261 | ||| || || | ||||||| Sbjct 227776 GAGACTGTTCCTCACACCATGT 227755 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| | |||||||||||||| ||||| || | || || || || ||||||| Sbjct 228227 TCCACGCATAGAAATGCATGCTGGTCAGACGCCCGTAGTTGGGCTCAGCGATGTGAATAT 228168 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| |||||| ||||||||||||||| || | ||||| ||||| || | || | Sbjct 228167 TCAGAGACTGAGATTGATCGATGAAAGCACCACGTTCAGCAGCCATATTCAAAACAACTT 228108 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017 |||| |||||||||| ||||||| | | ||| | |||||| || Sbjct 228107 TTTGTTTGATTTCCCAAACAGTTTTGTACAAAGCTTTCAGATCATCAGG 228059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694488160061920