Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2620 114 2e-20 seq20156 98.7 1e-15 >seq2620 Length=811290 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 9/221 (4%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || || |||||| || ||||| |||||||| | |||||||| || Sbjct 743879 TCATCTCTGCTGATCAACTCGTTACTGAACGTGAGACCAGGCATCACGCCACGCTTCTTC 743938 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| || || || || ||||| ||||| || || || || || ||||| || |||||| Sbjct 743939 AACCAGAAGATGGCTGCAAAAGACCCAGAGAAAAAAATACCCTCCACAGCAGCAAATGCG 743998 Query 46774 ACAAGTCTCTCTCCGTAACTG------GCATCATTATGAATCCACCTTTGAGCCCAATCA 46827 || | | ||| |||||||| | |||||| ||||| | ||||||||| Sbjct 743999 ACCACACGCTCAGCGTAACTGCTCTGAGAATCATTG---ATCCAACGCAATGCCCAATCA 744055 Query 46828 GCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 || || | ||| ||||| ||||| || || || || || || Sbjct 744056 GCTTTCTCCTTAACACAGGGCATCGTCTCGATGGCGTTGAA 744096 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 46333 CCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 46392 ||||| || ||||||||||| || | ||||| || || || |||||||| |||||||| Sbjct 743443 CCCATCTTCTGGTATTCACCAACCCTCTTCTCAAAGAAGTTTGTTTTGCCCTCCAATGAG 743502 Query 46393 ATATTTTCCATAAAATCAAACGGATT 46418 || || ||||| || ||||||||||| Sbjct 743503 ATGTTGTCCATGAAGTCAAACGGATT 743528 >seq20156 Length=513389 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 75655 ATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATT 75714 |||||| || ||||| ||||||| | | || || | | | | || | || | || Sbjct 227956 ATTCTTCATGTCATCGTTCCACAGTCCATTTTCAGTCAGATCCTTCAGTAAGTGGTGGTT 227897 Query 75715 AACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTC 75774 || | || ||||||||||| | |||| ||||||||| || || || || |||||||| Sbjct 227896 GACGACCTGGAATTCTCCAGAGAGAACTCGTCGAGTGTAGATGTTGCTAGTGTATGGTTC 227837 Query 75775 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAA 75834 || ||||||||||| | ||| ||||| ||||| || || ||||| || |||| | Sbjct 227836 AGTTGACTCATTGTTTCCGAGAATCTGAGCGGTTGAGGCGGTTGGCATTGGAGCCATGAG 227777 Query 75835 TAAACTATTTCTGAGACCATGT 75856 | ||| || || | ||||||| Sbjct 227776 GAGACTGTTCCTCACACCATGT 227755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712749010320960