Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq18747 132 1e-25 seq3888 129 1e-24 >seq18747 Length=106157 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || |||||||| |||||||| ||||||| Sbjct 22294 CAGATCTTCGTGAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTGGAGCCCTCAGAC 22353 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| ||||| || || || || ||||| Sbjct 22354 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 22413 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || || || |||||||| | || || ||| || ||| || Sbjct 22414 AGATTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAACATC 22473 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 22474 CAGAAGGAGTCCACCCTTCA-CTTG 22497 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || || ||||| ||||| || ||||||| Sbjct 22522 CAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCTCAGAC 22581 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| |||||| ||||| |||||||| ||||| ||||| || || ||||| Sbjct 22582 ACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAGCAG 22641 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || || |||||||| | || || || || ||| || Sbjct 22642 AGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGCCGCACCCTGAGTGACTACAACATC 22701 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 22702 CAGAAAGAGTCCACCCTTCA-CTTG 22725 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || || ||||| ||||| || ||||||| Sbjct 22750 CAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCTCAGAC 22809 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||||| |||||||| ||||| || || || || |||||| Sbjct 22810 ACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAA 22869 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || || |||||||| | || || ||| || ||| || Sbjct 22870 AGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAACATC 22929 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 22930 CAGAAAGAGTCCACCCTTCA-CTTG 22953 Score = 114 bits (126), Expect = 3e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || || ||||| ||||| || ||||||| Sbjct 23206 CAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCTCAGAC 23265 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| ||||| |||||||| ||||| || || || || ||||| Sbjct 23266 ACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 23325 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || || |||||||| | || || ||| || ||| || Sbjct 23326 AGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAACATC 23385 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 23386 CAGAAGGAGTCCACCCTTCA-CTTG 23409 Score = 109 bits (120), Expect = 1e-18 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || || ||||| ||||| || ||||||| Sbjct 23434 CAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTTGAGCCCTCAGAC 23493 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || ||| ||||| |||||||| ||||| || || || || ||||| Sbjct 23494 ACCATTGAGAATGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 23553 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || || |||||||| | || || || || ||| || Sbjct 23554 AGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGTCGCACCCTGAGTGACTACAACATC 23613 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 23614 CAGAAGGAGTCCACCCTTCA-CTTG 23637 >seq3888 Length=367485 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || |||||||| |||||||| ||||||| Sbjct 211266 CAGATCTTTGTGAAGACCCTAACTGGCAAGACCATCACCCTTGAGGTGGAGCCCTCAGAC 211325 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| ||||| ||||| || || ||||| Sbjct 211326 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAGCAG 211385 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| || || |||||||| | || || ||| || ||| || Sbjct 211386 AGATTGATCTTTGCTGGAAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAACATC 211445 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || || | || ||| | || ||| Sbjct 211446 CAGAAGGAGTCCACCCTTCACTTGGTGTTGCGTCTGAGA 211484 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || |||||||| |||||||| ||||||| Sbjct 211494 CAGATCTTTGTGAAGACCCTAACTGGCAAGACCATCACCCTTGAGGTGGAGCCCTCAGAC 211553 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| ||||| ||||| || || ||||| Sbjct 211554 ACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAGCAG 211613 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| || || |||||||| | || || ||| || ||| || Sbjct 211614 AGATTGATCTTTGCTGGAAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAACATC 211673 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || || | || ||| | || ||| Sbjct 211674 CAGAAGGAGTCCACCCTTCACTTGGTGTTGCGTCTGAGA 211712 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || |||||||| |||||||| ||||||| Sbjct 211722 CAGATCTTTGTGAAGACCCTAACTGGCAAGACCATCACCCTTGAGGTGGAGCCCTCAGAC 211781 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| ||||| ||||| || || ||||| Sbjct 211782 ACCATAGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAGCAG 211841 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| || || |||||||| | || || ||| || ||| || Sbjct 211842 AGATTGATCTTTGCTGGAAAGCAACTGGAAGATGGTCGCACCCTGAGCGACTACAACATC 211901 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || || | || ||| | || ||| Sbjct 211902 CAGAAGGAGTCCACCCTTCACTTGGTGTTGCGTCTGAGA 211940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203410359366782