Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capitella_20teleta_20[genbank_20GCA_5F000328365.1_202013-01-25] 20,803 sequences; 333,283,208 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq18747 109 5e-19 seq13439 95.1 1e-14 >seq18747 Length=106157 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| ||||||||| ||||| |||||| |||||||| Sbjct 22508 AGACGCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGA 22449 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || || ||||||||||| || |||| | ||| || || | ||||| || ||| Sbjct 22448 CCATCTTCCAGTTGCTTGCCGGCAAAGATCAATCTCTGCTGATCTGGGGGAATGCCTTCC 22389 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| | ||||||||| | || Sbjct 22388 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCTGAGGGCTCCACCTCAAGGGTG 22329 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| ||||| |||||||| Sbjct 22328 ATTGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 22291 >seq13439 Length=213493 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || || ||||||||||||||| ||||| |||||||| Sbjct 37606 AGACGCAGCACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCACTCAGGGTGCGA 37547 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || |||| | ||| || || | ||| | || |||| Sbjct 37546 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATGCCCTCC 37487 Query 41765 TTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCG 41822 ||||| ||| || ||| || || | || || | ||||||||| | | Sbjct 37486 TTGTCTTGGATCTTGGCCTTGACATTTTCG--ATCGTATCAGATGGCTCCACCTCAAGGG 37429 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || |||||||| ||||| || || |||||||| Sbjct 37428 TGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 37389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462183783623600