Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 3e-13 seq7 87.8 4e-12 seq3 86.0 1e-11 seq1 86.0 1e-11 >seq11 Length=5152901 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||| |||||||||||||||||||| |||| |||||| ||||||||||||| Sbjct 3293374 CTTGCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCG 3293315 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 3293314 AGCCCCACGTTGGGC 3293300 >seq7 Length=6125209 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 165702 AAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG 165761 ||||| | ||||| |||||||||||||||||||| |||| |||||| |||||||| Sbjct 5789679 AAACG-TCGCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGG 5789737 Query 165762 GTTCGAGCCCCACGATGGGC 165781 |||||||||||||| ||||| Sbjct 5789738 GTTCGAGCCCCACGTTGGGC 5789757 >seq3 Length=6703989 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| |||| |||||| |||||||||||||||| Sbjct 1977622 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 1977563 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1977562 CCCACGTTGGGC 1977551 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| |||| |||||| |||||||||||||||| Sbjct 1977780 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 1977721 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1977720 CCCACGTTGGGC 1977709 >seq1 Length=10041005 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| |||| |||||| |||||||||||||||| Sbjct 2445371 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 2445430 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2445431 CCCACGTTGGGC 2445442 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| |||| |||||| |||||||||||||||| Sbjct 2445519 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 2445578 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2445579 CCCACGTTGGGC 2445590 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| |||| |||||| |||||||||||||||| Sbjct 2446449 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 2446508 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2446509 CCCACGTTGGGC 2446520 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| |||| |||||| |||||||||||||||| Sbjct 2446598 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 2446657 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2446658 CCCACGTTGGGC 2446669 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| |||| |||||| |||||||||||||||| Sbjct 2452449 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 2452508 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2452509 CCCACGTTGGGC 2452520 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| |||| |||||| |||||||||||||||| Sbjct 2452598 GCCCGGCTAGCTCAGTCGGTAGAGCGTTGGACTCTTAATCCAACGGTCGTGGGTTCGAGC 2452657 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2452658 CCCACGTTGGGC 2452669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057806760113360