Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1191 113 4e-20 >seq1191 Length=772852 Score = 113 bits (124), Expect = 4e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 19003 AGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGG 19062 |||| |||||| || ||||| ||||| |||||| ||||||| ||||||| ||||||| Sbjct 254504 AGTTCTACGTTTGCAATGGTGAGTTATCATGCCAATTATACCAAAGATCGGCTGATATGG 254563 Query 19063 GCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATG 19122 | ||||| ||||| |||||||||||| | ||| |||| || || | ||| |||| |||| Sbjct 254564 GACTTGGTGTACCTTTCAACATTGCTAGTTATTCACTACTGACATGCATGATAGCCCATG 254623 Query 19123 TTACAGG 19129 | || || Sbjct 254624 TAACTGG 254630 Score = 113 bits (124), Expect = 4e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 19003 AGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGG 19062 |||| |||||| || ||||| ||||| |||||| ||||||| ||||||| ||||||| Sbjct 255756 AGTTCTACGTTTGCAATGGTGAGTTATCATGCCAATTATACCAAAGATCGGCTGATATGG 255815 Query 19063 GCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATG 19122 | ||||| ||||| |||||||||||| | ||| |||| || || | ||| |||| |||| Sbjct 255816 GACTTGGTGTACCTTTCAACATTGCTAGTTATTCACTACTGACATGCATGATAGCCCATG 255875 Query 19123 TTACAGG 19129 | || || Sbjct 255876 TAACTGG 255882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399497806689240