Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1191 82.4 6e-11 >seq1191 Length=772852 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||| ||||| || |||||||| || | || ||||| ||||||||||| || || || || Sbjct 254628 AGTTACATGGGCTATCATGCATGTCAGTAGTGAATAACTAGCAATGTTGAAAGGTACACC 254569 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 | ||||||||||| |||||||| || | ||| || || | || |||| || || || Sbjct 254568 AAGTCCCATATCAGCCGATCTTTGGTATAATTGGCATGATAACTCACCATTGCAAACGTA 254509 Query 101872 AAA 101874 || Sbjct 254508 GAA 254506 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||| ||||| || |||||||| || | || ||||| ||||||||||| || || || || Sbjct 255880 AGTTACATGGGCTATCATGCATGTCAGTAGTGAATAACTAGCAATGTTGAAAGGTACACC 255821 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 | ||||||||||| |||||||| || | ||| || || | || |||| || || || Sbjct 255820 AAGTCCCATATCAGCCGATCTTTGGTATAATTGGCATGATAACTCACCATTGCAAACGTA 255761 Query 101872 AAA 101874 || Sbjct 255760 GAA 255758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361245599703272