Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq964 141 1e-28 seq1212 123 3e-23 >seq964 Length=50745 Score = 141 bits (156), Expect = 1e-28 Identities = 331/488 (68%), Gaps = 15/488 (3%) Strand=Plus/Minus Query 147866 TGGTCTTAAAAGATATTAATGGAGTATACGAGCCGGGAAAAAGAAGATGGTTAAAAATAA 147925 |||| || || |||||||| || || || || || ||||| || ||| | ||| | | Sbjct 24307 TGGTGTTGAAGGATATTAAAGGGGTTTATGAACCAGGAAAGCGACATTGGCTTAAAGTGA 24248 Query 147926 AGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTACTAGGTG 147985 || |||||| | | |||| ||||| ||| | || |||||||||||||| |||| Sbjct 24247 AGAAGGACTATCTAATGCAGGGACAGATGGCGGATACCGCTGATTTAGTAGTACTGGGTG 24188 Query 147986 CTTACTATGGTAAAGG-AGCAAAGGGTGGTATTATGGCAGTCTTTCTAATGGGTTGTTAC 148044 |||||||||| | || |||||| ||||| || ||| | || || || ||||| ||| Sbjct 24187 CTTACTATGGGACTGGCAGCAAA-GGTGGAATGATGTCTGTGTTCCTGATGGGGGTTTAT 24129 Query 148045 GATGATGAATCCGGTAA--ATGGAAGACGGTAACTAAA---TGTTCAGGACATGATGATA 148099 ||||| || || || ||| ||||| |||||| | |||||||||||| Sbjct 24128 GATGA--AAAGCGAGAACGCTGGTGTACGGTTACTAAAGTCGGGAATGGACATGATGATG 24071 Query 148100 ATACGTT--AAGGGTTTTGCAAGACCAATTAACGATGGTTAAAATTAACAAGGATCCCaa 148157 | || || | | | ||| || | | || | | | ||||| | ||| ||| || Sbjct 24070 AGACATTGGAGAAGATAAACAA-ACAACTGAAAG-TTGAGAAAATAAGCAAAGATATGAA 24013 Query 148158 aaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCCGATTTTGTAGTAGAGGA 148217 | | | ||| |||||||| | ||||||| || | || ||||| || |||| || Sbjct 24012 GAGAGTACCAAAGTGGTTGAATTTGAATAAAAATCATGTCCCAGATTTGGTTGTAGCTGA 23953 Query 148218 TCCGAAACAAT-CTCAAATATGGGAAATTTCAGGAGCAGAGTTTACATCTTCCAAGTCAC 148276 || ||| ||| | | | | |||||||| | || | ||||| ||| || |||| | Sbjct 23952 -CCCAAAGAATGCACCAGTGTGGGAAATCACGGGTACTGAGTTCACACAATCAGAGTCTC 23894 Query 148277 ATACAGCGAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGAGAAGATAAAA 148336 |||| || | ||||| || || |||||||| ||| |||| | ||||||| ||||| | Sbjct 23893 ATACTGCAGAGGGAATTTCTATAAGATTTCCCAGAGTTACCAAGATTAGAAGGGATAAGA 23834 Query 148337 CGTGGAAA 148344 |||||| Sbjct 23833 ACTGGAAA 23826 >seq1212 Length=378467 Score = 123 bits (136), Expect = 3e-23 Identities = 162/224 (72%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| || ||||| |||||||||||||| || || ||||||| Sbjct 239090 CCTCATCTCTGCTAATCAGTTCATTTGAAAAAGTGAGTCCGGGCATCAGACCTCGCTTTT 239149 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| || |||| ||||| || || || || || ||||| || | ||||| | Sbjct 239150 TCAACCAGAAGATGGCGGCAAAGGAACCGCTGAAAAAGATGCCTTCAACAGAGGCAAAAG 239209 Query 24277 CAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGG 24333 |||||| || || |||| | | || ||||||||| ||||||| || | Sbjct 239210 CAATAATTCGCTCAGCATAGGTAGATTCAGAATCCGAGATCCACTTTAGAGCCCATTCTG 239269 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGA 24377 |||||||| ||||| |||| ||||| || ||||| |||||| Sbjct 239270 CCTTCTTTCGGACACAGGGCAAAGTCTCAATCGCATTGAAGAGA 239313 Score = 100 bits (110), Expect = 3e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| || ||||||||||||||||||||||| |||||||| | |||||| |||||| Sbjct 240379 ACCTCTTCAACAGTCCAAAATGATGCCTCTGCCTTCTTATACATTTGCCAGATATCATGA 240438 Query 24693 TATTGAATTGGAAAAATAACAAA 24715 || ||||| |||||||| || || Sbjct 240439 TACTGAATGGGAAAAATCACGAA 240461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593712159826560