Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1158 84.2 2e-11 >seq1158 Length=770266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | || |||||||| || |||| ||| || || ||||| || |||| ||| Sbjct 339214 GGAATCCCCCCAGATCAGCAACGTCTTATCTTCGCTGGTAAGCAGCTTGAAGACGGACGC 339155 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || | ||| |||||||||||||| ||| |||| || || Sbjct 339154 ACACTGAGCGATTACAACATCCAGAAAGAGTCCACTCTTCA 339114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515211008014720