Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1191 111 1e-19 >seq1191 Length=772852 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 97115 CAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCC 97174 |||| |||||||| ||||| || || | ||| ||||| ||||||||||| ||||| || | Sbjct 254629 CAGTTACATGGGCTATCATGCATGTCAGTAGTGAATAACTAGCAATGTTGAAAGGTACAC 254570 Query 97175 CTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACAT 97234 | |||||||||||||| |||||||| ||||| || || || | || |||| || || | Sbjct 254569 CAAGTCCCATATCAGCCGATCTTTGGTATAATTGGCATGATAACTCACCATTGCAAACGT 254510 Query 97235 AAAACT 97240 | |||| Sbjct 254509 AGAACT 254504 Score = 111 bits (122), Expect = 1e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 97115 CAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCC 97174 |||| |||||||| ||||| || || | ||| ||||| ||||||||||| ||||| || | Sbjct 255881 CAGTTACATGGGCTATCATGCATGTCAGTAGTGAATAACTAGCAATGTTGAAAGGTACAC 255822 Query 97175 CTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACAT 97234 | |||||||||||||| |||||||| ||||| || || || | || |||| || || | Sbjct 255821 CAAGTCCCATATCAGCCGATCTTTGGTATAATTGGCATGATAACTCACCATTGCAAACGT 255762 Query 97235 AAAACT 97240 | |||| Sbjct 255761 AGAACT 255756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346778623981040