Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ciona_20intestinalis_20[refseq_20GCF_5F000224145.2_202013-09-17] 1,272 sequences; 115,227,500 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1158 104 2e-17 >seq1158 Length=770266 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||||||||| |||||||||||||||| ||||| || || Sbjct 337707 ACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCTTCA 337766 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| || |||||| |||| ||||| |||||||| ||||| || || Sbjct 337767 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGGATTCC 337813 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||||||||| |||||||||||||||| ||||| || || Sbjct 338140 ACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCTTCA 338199 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| || |||||| |||| ||||| |||||||| ||||| || || Sbjct 338200 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGAGGGATTCC 338246 Score = 98.7 bits (108), Expect = 9e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||||||||| |||||||||||||||| || || ||| || Sbjct 341068 ACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTACGTCCATCTTCA 341127 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| || |||||| |||| ||||| |||||||| || || || || Sbjct 341128 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCC 341174 Score = 98.7 bits (108), Expect = 9e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||||||||| || |||||||||||||||| ||||| ||| || Sbjct 341871 ACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCATCTTCA 341930 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| || |||||| |||| ||||| |||||||| || || || || Sbjct 341931 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGGGATTCC 341977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||||||||| |||||||||||||||| || || || || Sbjct 338583 ACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGCTCAGTGTACGTCCGTCTTCA 338642 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| || |||||| |||| ||||| |||||||| || || || || Sbjct 338643 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCC 338689 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||||||||| || |||||||||||||||| || || ||| || Sbjct 341427 ACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTACGTCCATCTTCA 341486 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| || |||||| |||| ||||| |||||||| || || || || Sbjct 341487 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGTGGAATTCC 341533 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || |||||||| || |||||||||||||||| ||||| || || Sbjct 339108 ACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCTTCA 339167 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| || |||||| |||| ||||| |||||||| || || || || Sbjct 339168 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCC 339214 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | ||||||||||| || |||||||||||||||| ||||| || || Sbjct 340710 ACTAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCTTCA 340769 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| || |||||| |||| ||||| |||||||| || || || || Sbjct 340770 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCC 340816 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||||||| || || |||||||||||||||| ||||| || || Sbjct 337349 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCTTCA 337408 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| || ||||| |||| ||||| |||||||| || || || || Sbjct 337409 AGCTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGGGGGATTCC 337455 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || |||||||| || |||||||||||||||| ||||| || || Sbjct 340264 ACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGCTCAGTGTGCGTCCGTCTTCA 340323 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||||| || |||||| |||| ||||| || ||||| || || || || Sbjct 340324 AGCTGCTTACCAGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCC 340370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433823674544224